Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq229830 87.8 1e-12 >seq229830 Length=7395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||||| || |||||| |||||||| || || | || | | ||| ||| Sbjct 5771 CAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAG-TGCGTCCAT 5713 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| ||||| || || || || | |||||||||||| | || | || ||||||| Sbjct 5712 CTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGT 5653 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||| || ||| || | | || | || | ||||| || | ||| || | Sbjct 5652 CCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTG 5593 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || | |||||| || || ||||||||||| Sbjct 5592 TTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||||| || ||| || || || || ||||| | || | | || |||| | Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAG-TGCGACCATCTT 6165 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||||| |||||||| || || ||||| || ||| | || | || || ||||| Sbjct 6164 CCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTT 6106 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| |||||| | | || | ||| | |||||| || | ||| || || | Sbjct 6105 GAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCT 6046 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | |||||| || ||||| |||||| Sbjct 6045 TTCCAGTCAAAGTCTTGACGAAGATTTGCATA 6014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323719492752648