Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 87.8 1e-12
>seq229830
Length=7395
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827
||| |||||||||| || |||||| |||||||| || || | || | | ||| |||
Sbjct 5771 CAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAG-TGCGTCCAT 5713
Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887
| |||| ||||| || || || || | |||||||||||| | || | || |||||||
Sbjct 5712 CTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGT 5653
Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
| ||| || ||| || | | || | || | ||||| || | ||| || |
Sbjct 5652 CCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTG 5593
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||| || || | |||||| || || |||||||||||
Sbjct 5592 TTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830
||||||||||| || ||| || || || || ||||| | || | | || |||| |
Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAG-TGCGACCATCTT 6165
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
||| ||||| |||||||| || || ||||| || ||| | || | || || |||||
Sbjct 6164 CCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTT 6106
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|||||| |||||| | | || | ||| | |||||| || | ||| || || |
Sbjct 6105 GAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCT 6046
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|||| || | |||||| || ||||| ||||||
Sbjct 6045 TTCCAGTCAAAGTCTTGACGAAGATTTGCATA 6014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323719492752648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |