Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq47247 100 4e-16 seq226481 86.0 8e-12 >seq47247 Length=7776 Score = 100 bits (110), Expect = 4e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 126649 ||||| ||| ||||||||||||||||| |||| | |||| ||||| ||||||||||| Sbjct 6832 CGTATTCCACAAATTGGAGACAAATTTGCTTCTCGTCATGG-ACAAAAGGGAACTTGTGG 6890 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATTAT 126709 ||| ||| |||||||||||||| |||||| ||| | || || |||||||| Sbjct 6891 TATTCAATATAGGCAAGAAGATATGCCCTTTACATCTGAAGGCTTAACACCAGATATTAT 6950 Query 126710 AATTAATCC 126718 ||||||||| Sbjct 6951 AATTAATCC 6959 >seq226481 Length=4705 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/181 (71%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 43936 GGTACTTATGGTCGAATTGCTTCAAGATCTGGTTTATCCTTTAAAAATGGTATTGAAGTA 43995 ||| | ||||| ||| ||||| |||||||||||||| | |||||||| || || || Sbjct 2472 GGTTCCTATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTC 2413 Query 43996 GGGGCGGGTGTTATCGACGAAGATTATC----AAAACGAGTTGATGGTTATTTTACACAA 44051 || || || ||| | || |||||||||| ||| | ||| ||| |||| ||| Sbjct 2412 GGTGCAGGAGTTGTTGATGAAGATTATCGTGGAAATC---TTG-GAGTTGTTTTGTTCAA 2357 Query 44052 CCATTCAGACACAGATTTCAATGTTGAAGTGGGAGATAGAATTGCACAAATTATTATTGA 44111 ||||| ||||| |||||| | || | || || |||||||| ||| ||||| ||| Sbjct 2356 TCATTCCGACACTGATTTCGAGGTCAAGAAAGGGGACAGAATTGCCCAACTTATTTGTGA 2297 Query 44112 A 44112 | Sbjct 2296 A 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656501723328360