Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 381 7e-101
>seq54449
Length=2482
Score = 381 bits (422), Expect = 7e-101
Identities = 672/971 (69%), Gaps = 17/971 (2%)
Strand=Plus/Plus
Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTAT 47932
|||||||||||| || |||| |||||| || || | |||| |||| || ||| | ||
Sbjct 1278 ATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTAC 1337
Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992
||||||| || ||||||| ||| || || ||||| | |||||| |||||| | |
Sbjct 1338 GATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCT 1397
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
||| || || || ||||| | |||| | || ||||||||||||| || || ||||| ||
Sbjct 1398 GTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAAT 1457
Query 48053 AGATTTCCAAACAGTCCT--AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110
| | ||| | || | ||| ||||| | ||||| |||| ||| ||
Sbjct 1458 TGCATACCAGA--GTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCATTTTCATAC 1515
Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170
||| |||| | ||||||||||| || || | |||| | || || ||||||| | |
Sbjct 1516 TTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGA 1575
Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230
|||||||| | |||||||| || ||| | || | ||||||| | |||||| |||
Sbjct 1576 GGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATC 1635
Query 48231 CAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289
|| | ||| || ||| | ||| |||| || ||||| || || | || | || |
Sbjct 1636 CATAAAGCGTAGAAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAA 1694
Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349
|| | ||| || | ||||| | |||||| ||||| ||||| ||||| | | | || ||
Sbjct 1695 ATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGG 1754
Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409
| || || ||||||||||||| ||||| |||| ||| || | ||||||||||| ||
Sbjct 1755 CCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGG 1814
Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA-- 48467
|| | ||||||||| | ||||| ||||| | |||| | || |||| | |||
Sbjct 1815 AACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACA 1874
Query 48468 --TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525
||| ||| || || || || ||||| || || || | |||||| ||| ||
Sbjct 1875 GTGTAC--ATTTAA--TCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTTCAA 1930
Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585
|| | | || |||||||| ||| ||| ||| |||||||| |||||
Sbjct 1931 CGGACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACA 1990
Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645
||| || || | | | |||||| |||||||| || |||||||| | | |
Sbjct 1991 ATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTT 2050
Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705
| ||||| | |||||||| |||||| | | |||||| || | ||| || |||| ||
Sbjct 2051 CAGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAG 2110
Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765
|| | ||| | ||| | ||||||||||||| ||||||| |||||| ||||||||||
Sbjct 2111 CGACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGAT 2170
Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT-GAAAAGTCGTTATCATTAATA 48824
|||| |||||||||||||| ||||| || |||||| |||| || |||||| |||
Sbjct 2171 ATGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAAACTC--TATCATAAATG 2228
Query 48825 ATTGATGAATT 48835
|| ||||||||
Sbjct 2229 ATAGATGAATT 2239
Score = 295 bits (326), Expect = 7e-75
Identities = 471/675 (70%), Gaps = 5/675 (1%)
Strand=Plus/Plus
Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| || ||||| || | || | ||| || | |||||| |||||||| ||||| ||
Sbjct 268 TTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCC 327
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
|| || | ||| || |||| | ||||||||||| ||||||||| ||| | ||
Sbjct 328 TGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGG 387
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
||||| | ||||||||| | || ||||| ||||||||||| |||||||||||||| ||
Sbjct 388 TTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGC 447
Query 47153 CATATCTAAAATAACCCTTTGTGG-TATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211
||| | | || || ||| ||| ||||| || |||||||||| || | | || |
Sbjct 448 CATTTGAATTGTAGAT-TTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATAT 506
Query 47212 CTTCTGGGAGA--TTAGTATT-TTGAATAGATCCTCCgttttctataattttgtttttta 47268
| |||| | || | || ||| ||||| || | ||| ||||||| |||||| |
Sbjct 507 GTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCA 566
Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328
|||| ||| | | | || ||||| || | | ||| | || |||| ||
Sbjct 567 TATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTACAACTT 626
Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388
| || || ||||||| ||||| |||| |||| ||||| ||||||||||| | ||||
Sbjct 627 GGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATT 686
Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448
|||| ||||| ||||||||||||||||| || || ||||| | ||||| ||||| ||
Sbjct 687 CATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAAT 746
Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508
|||||||||||| | ||| | || ||||||||| | ||| | ||
Sbjct 747 TTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATCAGTTG 806
Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568
| | ||| | ||||||||| | |||||||| || | || || | |||||
Sbjct 807 GGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTCATATG 866
Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628
||| ||||| ||| | | || ||| ||||||||||||||||| | || | |||||| |
Sbjct 867 TTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATAATAAA 926
Query 47629 TTGTTTCAAATATTT 47643
|||| ||||||||||
Sbjct 927 TTGTCTCAAATATTT 941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560485422759240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |