Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq54449 381 7e-101 >seq54449 Length=2482 Score = 381 bits (422), Expect = 7e-101 Identities = 672/971 (69%), Gaps = 17/971 (2%) Strand=Plus/Plus Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTAT 47932 |||||||||||| || |||| |||||| || || | |||| |||| || ||| | || Sbjct 1278 ATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTAC 1337 Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992 ||||||| || ||||||| ||| || || ||||| | |||||| |||||| | | Sbjct 1338 GATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCT 1397 Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || || || ||||| | |||| | || ||||||||||||| || || ||||| || Sbjct 1398 GTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAAT 1457 Query 48053 AGATTTCCAAACAGTCCT--AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110 | | ||| | || | ||| ||||| | ||||| |||| ||| || Sbjct 1458 TGCATACCAGA--GTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCATTTTCATAC 1515 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170 ||| |||| | ||||||||||| || || | |||| | || || ||||||| | | Sbjct 1516 TTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGA 1575 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 |||||||| | |||||||| || ||| | || | ||||||| | |||||| ||| Sbjct 1576 GGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATC 1635 Query 48231 CAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 || | ||| || ||| | ||| |||| || ||||| || || | || | || | Sbjct 1636 CATAAAGCGTAGAAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAA 1694 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || | ||| || | ||||| | |||||| ||||| ||||| ||||| | | | || || Sbjct 1695 ATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGG 1754 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 | || || ||||||||||||| ||||| |||| ||| || | ||||||||||| || Sbjct 1755 CCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGG 1814 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA-- 48467 || | ||||||||| | ||||| ||||| | |||| | || |||| | ||| Sbjct 1815 AACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACA 1874 Query 48468 --TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525 ||| ||| || || || || ||||| || || || | |||||| ||| || Sbjct 1875 GTGTAC--ATTTAA--TCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTTCAA 1930 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 || | | || |||||||| ||| ||| ||| |||||||| ||||| Sbjct 1931 CGGACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACA 1990 Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645 ||| || || | | | |||||| |||||||| || |||||||| | | | Sbjct 1991 ATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTT 2050 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705 | ||||| | |||||||| |||||| | | |||||| || | ||| || |||| || Sbjct 2051 CAGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAG 2110 Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765 || | ||| | ||| | ||||||||||||| ||||||| |||||| |||||||||| Sbjct 2111 CGACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGAT 2170 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT-GAAAAGTCGTTATCATTAATA 48824 |||| |||||||||||||| ||||| || |||||| |||| || |||||| ||| Sbjct 2171 ATGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAAACTC--TATCATAAATG 2228 Query 48825 ATTGATGAATT 48835 || |||||||| Sbjct 2229 ATAGATGAATT 2239 Score = 295 bits (326), Expect = 7e-75 Identities = 471/675 (70%), Gaps = 5/675 (1%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||||| || | || | ||| || | |||||| |||||||| ||||| || Sbjct 268 TTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCC 327 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | ||| || |||| | ||||||||||| ||||||||| ||| | || Sbjct 328 TGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGG 387 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||||| | ||||||||| | || ||||| ||||||||||| |||||||||||||| || Sbjct 388 TTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGC 447 Query 47153 CATATCTAAAATAACCCTTTGTGG-TATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| | | || || ||| ||| ||||| || |||||||||| || | | || | Sbjct 448 CATTTGAATTGTAGAT-TTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATAT 506 Query 47212 CTTCTGGGAGA--TTAGTATT-TTGAATAGATCCTCCgttttctataattttgtttttta 47268 | |||| | || | || ||| ||||| || | ||| ||||||| |||||| | Sbjct 507 GTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCA 566 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | | | || ||||| || | | ||| | || |||| || Sbjct 567 TATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTACAACTT 626 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | || || ||||||| ||||| |||| |||| ||||| ||||||||||| | |||| Sbjct 627 GGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATT 686 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 |||| ||||| ||||||||||||||||| || || ||||| | ||||| ||||| || Sbjct 687 CATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAAT 746 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 |||||||||||| | ||| | || ||||||||| | ||| | || Sbjct 747 TTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATCAGTTG 806 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | | ||| | ||||||||| | |||||||| || | || || | ||||| Sbjct 807 GGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTCATATG 866 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||||| ||| | | || ||| ||||||||||||||||| | || | |||||| | Sbjct 867 TTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATAATAAA 926 Query 47629 TTGTTTCAAATATTT 47643 |||| |||||||||| Sbjct 927 TTGTCTCAAATATTT 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560485422759240