Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq226481 118 8e-22 seq230506 105 5e-18 seq160753 105 5e-18 seq229830 91.5 1e-13 >seq226481 Length=4705 Score = 118 bits (130), Expect = 8e-22 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||||||| | || || || || |||||||||| | ||| ||||| |||||||| || Sbjct 2270 TCTACCAATTCTGGGTAGAATATGCGTTCACAAATAAGTTGGGCAATTCTGTCCCCTTTC 2329 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 || || | || || ||||||||||||||||||| || ||||| | || || | ||| Sbjct 2330 TTGACCTCGAAATCAGTGTCGGAATGATTGAACAAAACAACTCCAAGATTTCCACGATAA 2389 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 || ||||| | || || ||||| || |||||||| | || || |||| ||||| | Sbjct 2390 TCTTCATCAACAACTCCTGCACCGACATCGATGAAATTTTTAACAGCTAAACCAGATCTT 2449 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCA 9292 || || | ||| || ||| | || | |||| || | | | ||| ||| |||||| Sbjct 2450 GGAGCAACTCGTCCATAGGAACCTTCAGGTACATGGATTTGAATGTCCGTCTTGACCA 2507 >seq230506 Length=9938 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||||||| | || || || || |||||||||| | || ||||| |||| ||| || Sbjct 5766 TCTACCAATTCTGGGTAGAATATGCGTTCACAAATAAGTTTGGCAATTCTGTTCCCTTTC 5825 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 | || | || || || |||||||||||||||| || ||||| | || || | ||| Sbjct 5826 TCGACCTCGAAATCAGTATCGGAATGATTGAACAAAACAACTCCAAGATTTCCACGATAA 5885 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 |||||||| | || || ||||| || |||||||| | || || |||| ||||| | Sbjct 5886 TCCTCATCAACAACTCCTGCACCAACATCGATGAAATTTTTAACAGCTAAACCAGATCTT 5945 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTA 9265 || || | ||| || ||| | || || |||| Sbjct 5946 GGAGCAACTCGTCCATAGGAACCTACAGGTA 5976 >seq160753 Length=592 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || ||| |||||||| || ||||| || | | || Sbjct 146 AGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGT 205 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| || |||||||| | || | || ||| Sbjct 206 CCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCC 265 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | ||||| | ||| || || | || Sbjct 266 TTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTG 325 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||||||||| || ||||||||||| Sbjct 326 ATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 >seq229830 Length=7395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||||||||||| |||||||| | | | || Sbjct 5776 AGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGT 5717 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || || || || |||| || || || || | ||| | || ||| Sbjct 5716 CCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCC 5657 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | || || || | || ||||||| ||| Sbjct 5656 TTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTA 5597 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||||||| || || ||||||||||| Sbjct 5596 ATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379864951263243