Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq226481 118 8e-22
seq230506 105 5e-18
seq160753 105 5e-18
seq229830 91.5 1e-13
>seq226481
Length=4705
Score = 118 bits (130), Expect = 8e-22
Identities = 169/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114
||||||| | || || || || |||||||||| | ||| ||||| |||||||| ||
Sbjct 2270 TCTACCAATTCTGGGTAGAATATGCGTTCACAAATAAGTTGGGCAATTCTGTCCCCTTTC 2329
Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174
|| || | || || ||||||||||||||||||| || ||||| | || || | |||
Sbjct 2330 TTGACCTCGAAATCAGTGTCGGAATGATTGAACAAAACAACTCCAAGATTTCCACGATAA 2389
Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234
|| ||||| | || || ||||| || |||||||| | || || |||| ||||| |
Sbjct 2390 TCTTCATCAACAACTCCTGCACCGACATCGATGAAATTTTTAACAGCTAAACCAGATCTT 2449
Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCA 9292
|| || | ||| || ||| | || | |||| || | | | ||| ||| ||||||
Sbjct 2450 GGAGCAACTCGTCCATAGGAACCTTCAGGTACATGGATTTGAATGTCCGTCTTGACCA 2507
>seq230506
Length=9938
Score = 105 bits (116), Expect = 5e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114
||||||| | || || || || |||||||||| | || ||||| |||| ||| ||
Sbjct 5766 TCTACCAATTCTGGGTAGAATATGCGTTCACAAATAAGTTTGGCAATTCTGTTCCCTTTC 5825
Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174
| || | || || || |||||||||||||||| || ||||| | || || | |||
Sbjct 5826 TCGACCTCGAAATCAGTATCGGAATGATTGAACAAAACAACTCCAAGATTTCCACGATAA 5885
Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234
|||||||| | || || ||||| || |||||||| | || || |||| ||||| |
Sbjct 5886 TCCTCATCAACAACTCCTGCACCAACATCGATGAAATTTTTAACAGCTAAACCAGATCTT 5945
Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTA 9265
|| || | ||| || ||| | || || ||||
Sbjct 5946 GGAGCAACTCGTCCATAGGAACCTACAGGTA 5976
>seq160753
Length=592
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| |||||||| || || ||| |||||||| || ||||| || | | ||
Sbjct 146 AGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGT 205
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| ||||| || |||| || |||||||| | || | || |||
Sbjct 206 CCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCC 265
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || || | | | ||||| | ||| || || | ||
Sbjct 266 TTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTG 325
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| ||||||||||| || |||||||||||
Sbjct 326 ATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363
>seq229830
Length=7395
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || || ||||||||||| |||||||| | | | ||
Sbjct 5776 AGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGT 5717
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || || || || || |||| || || || || | ||| | || |||
Sbjct 5716 CCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCC 5657
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || ||| ||| | | || || || | || ||||||| |||
Sbjct 5656 TTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTA 5597
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||||||| || || |||||||||||
Sbjct 5596 ATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379864951263243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |