Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_019489.1 Length=41726 Score E Sequences producing significant alignments: (Bits) Value seq139140 351 3e-92 seq125644 129 2e-25 >seq139140 Length=514 Score = 351 bits (388), Expect = 3e-92 Identities = 269/319 (84%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 40593 GCCTAATTTAGACCATATAGAGACCGTTAGCGGCTCCCACAGCCAATTTTATGTGGACTG 40652 ||| ||||| |||||||| |||||||||||||| || | |||| |||| | || || Sbjct 321 GCCAAATTTGGACCATATCGAGACCGTTAGCGGTTCACGTGACCAACTTTACCTAGATTG 262 Query 40653 GGAAATAGCTGACACACGTAAAGCTAGGCCACAACAACGACGCTTGTTCTTCGCGTTGCT 40712 |||| ||||||||||||| || ||||||||||||||||| || | ||||| || |||| Sbjct 261 GGAATTAGCTGACACACGCAAGGCTAGGCCACAACAACGGCGACTATTCTTTGCCCTGCT 202 Query 40713 TAGTGACATCTATACGTGGTCAGGTATGCCGACAGACTTCTTGAAAAACTTGTTTTATTT 40772 |||||||| ||||| |||||||| ||||| |||||||| |||||| | ||||| ||| | Sbjct 201 GAGTGACATTTATACCTGGTCAGGCATGCCTACAGACTTTTTGAAAGAGTTGTTCTATCT 142 Query 40773 GCAATATGAGTCATATACGTTTGGCAAGCAGATTAGCCTGTCAGACACCACAGAATCGTC 40832 |||||||||| ||| ||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 141 GCAATATGAGGAATACACGTTTGGCAAACAAATTAGCCTGTCAGACACGACAGAATCGTC 82 Query 40833 TGTGAGCGATGCTAACCAGTTACTCGACCTAGTTATCGACTTCATGTTTGAGTGGCACGT 40892 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 81 CGTGAGCGATGCTAACGTGTTACTCGACCTAGTTATCGACTTCATGTTTACGTGGCGTGT 22 Query 40893 GCCGTTCAAGGAAGGCTAT 40911 |||||||| |||||||| Sbjct 21 ACCGTTCAAACAAGGCTAT 3 >seq125644 Length=474 Score = 129 bits (142), Expect = 2e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 40841 ATGCTAACCAGTTACTCGACCTAGTTATCGACTTCATGTTTGAGTGGCACGTGCCGTTCA 40900 |||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 358 ATGCTAACGTGTTACTCGACCTAGTTATCGACTTCATGTTTACGTGGCGTGTACCGTTCA 299 Query 40901 AGGAAGGCTATCAGCTATTGCCACGTGAGCAAGAGTATTATCTGTTTCAATGTTGCCGCC 40960 | |||||||| | | | ||||| ||| || |||||| ||| ||| |||||||| | Sbjct 298 AACAAGGCTATGAACAGCTTCCACGAGAGGAAAGGTATTACATGTATCAGTGTTGCCGGC 239 Query 40961 ACCGAGTTTGCATGATCTGCGGTAATCGTGCTGATATCCATCATGT 41006 | ||||| ||| | || ||| | || || || || |||||||| Sbjct 238 ATCGAGTGTGCTGTGTATGTGGTGAACGAGCAGAAATTCATCATGT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133035597786096