Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq54449 154 7e-33 >seq54449 Length=2482 Score = 154 bits (170), Expect = 7e-33 Identities = 321/473 (68%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| |||||||||||||| | || || || | |||||| |||| | |||||||| Sbjct 1617 CATAAACAAATCTGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTT 1676 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| || || || | ||| || || |||||||||||||| ||||| ||||| |||| Sbjct 1677 TCCTGTG-TTTTTCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAAT 1735 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | || || || || || || || ||||||||||| |||| ||| | || Sbjct 1736 AAATTGCGAATGCTCCAGGCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTAT 1795 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGG 26171 |||| ||| | ||||| |||||||| ||| ||||| ||| || || | | ||| | Sbjct 1796 TGAAGACTCTTAACATGGGAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTG 1855 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 ||| | | | |||| ||| ||| | |||||||| || || | || ||||| Sbjct 1856 TCCCTTTAGCCCGAATACAGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAATCA 1915 Query 26232 CTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATA 26291 ||||| | | ||| | | ||| || |||| |||| ||| |||| || | Sbjct 1916 TAGCACATTGTTCAACGGACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAGAA 1975 Query 26292 AAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCAT 26351 |||||| ||||| ||||| | | ||| | | | |||||| || || | || | Sbjct 1976 GAAAACATGAAGACAATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGT 2035 Query 26352 GAGTATAATATCCTTCA-CTCAAAGCTGTATAAGTTTCAAGAACTTCATCGAT 26403 || || |||| | |||| | |||| | |||| || |||| | || |||| || Sbjct 2036 GAATAAAATACCTTTCAGATAAAAGAT-TATATGTCTCAATAGCTGCATCTAT 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252327486884075