Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq80618 109 1e-18 seq229830 105 1e-17 seq160753 104 4e-17 seq193759 91.5 3e-13 >seq80618 Length=357 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| || || | ||| || ||||| |||||||| || || || | Sbjct 305 ATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGT 246 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||| ||||| || |||| || | |||| ||| || Sbjct 245 TGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTG 186 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| |||||||| | || || || ||||| || | || || || || || ||| Sbjct 185 TCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGC 126 Query 193359 ATT 193361 ||| Sbjct 125 ATT 123 >seq229830 Length=7395 Score = 105 bits (116), Expect = 1e-17 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| | ||||| |||| || | |||| || || ||||| |||||| Sbjct 6243 ATACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 6184 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||| || | | ||| || |||||||| |||||||| || | | ||| |||| ||| Sbjct 6183 CTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGA 6125 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | || | ||| ||| || || || | |||| Sbjct 6124 GGAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCA 6065 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || ||||| || || || | || || || || |||||||| Sbjct 6064 ACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || || || || || | || || || || || |||||||| || Sbjct 5714 ATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTT 5655 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | |||| |||||||||||| | ||||| || | || || Sbjct 5654 GTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAAT 5595 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || | || || || || || ||||| || Sbjct 5594 TGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 >seq160753 Length=592 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | || | ||| || || ||||| || Sbjct 362 ATACCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCT 421 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | ||| || |||||||| || || || || || | || ||||| ||| Sbjct 422 GATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGA 481 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||||||||| || || || | || | ||| ||| || || || | ||| Sbjct 482 GGGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCA 541 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || |||||||| || || | ||||| || || || ||||| Sbjct 542 ACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 >seq193759 Length=801 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||| || || ||||| || |||| |||||||| ||||| ||||| ||||| ||||| Sbjct 324 AATTGCTTGCCAGCAAAGATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGA 265 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| | | | ||| |||||| | |||| || |||| | || || |||||| Sbjct 264 ATCTTGGCTATAACATTCTCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTA 206 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | | || ||||||||||| ||||| ||| Sbjct 205 CAGATAAGGGTTTTTACAAAAATTTGAATT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897056186847120