Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq229830 127 3e-24 seq160753 125 1e-23 >seq229830 Length=7395 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| || ||||| ||||| || |||| Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || || || ||||| |||||||| || |||||||| ||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || || | ||||| | || || ||||| ||||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || |||||||| ||| | | ||||| ||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGGT 6014 Score = 105 bits (116), Expect = 1e-17 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| |||||||| |||||||| || ||| Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||| || ||||| |||||||| || |||||||| | | Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATC-A 6133 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||||||||| || | |||||| | |||||| || || | Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACA-- 6191 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| || | || ||||| || || Sbjct 6192 ATATCCAAAAGGAATCTACTCTTCACTTGGT 6222 >seq160753 Length=592 Score = 125 bits (138), Expect = 1e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||||||||||||| || | ||||| || || Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCA 304 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || |||||||| ||||| || |||||||| ||| Sbjct 303 GACACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 244 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||| |||||| | |||||| | || || ||||||||||| Sbjct 243 CAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAAC 184 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || |||||||| || || Sbjct 183 AT-TCAAAAGGAGTCAACCCTTCATTTGGTATT 152 Score = 114 bits (126), Expect = 2e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| |||||||| || | ||||| ||| ||| Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||| || || ||||||||||| || |||||||| || Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || || || || | |||||| | || ||||||||||||| Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATA-- 414 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || ||||| || || Sbjct 413 ACATCCAAAAGGAGTCAACTCTTCACTTGGT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729758344515600