Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq160753 145 1e-29
seq229830 140 6e-28
seq80618 127 4e-24
seq193759 91.5 3e-13
>seq160753
Length=592
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || || || | ||| | ||| || ||| ||||||||
Sbjct 362 ATACCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCT 421
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||||||| ||| |||| ||||||||||| ||||| ||||| || | || ||||| ||
Sbjct 422 GATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGA 481
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||||||||| || || ||| || || || || | || || | |||
Sbjct 482 GGGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCA 541
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || || ||||| ||||| || ||||| | || ||||||||
Sbjct 542 ACTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591
>seq229830
Length=7395
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| ||||| ||||||||||||||||| | |||| ||||| || ||||| ||
Sbjct 6016 ATACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCT 5957
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| ||| | || ||||||||||| ||||||||||| || | |||||||| ||
Sbjct 5956 GACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGA 5897
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| || || || || || || | || || | ||
Sbjct 5896 GGAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCA 5837
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || |||||||| ||||| || ||||| | || || |||||
Sbjct 5836 ACTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787
Score = 123 bits (136), Expect = 5e-23
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | |||||| ||||| || || | || | ||||| || || |||||
Sbjct 5788 ATACCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCG 5729
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || ||| |||| ||||||||||| ||||| ||||| || | || || || ||
Sbjct 5728 CTCAAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGG 5669
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| || || || |||||| ||| ||||| |||| ||| || | |||
Sbjct 5668 GGGATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 5609
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || | ||||| ||||||||||| || || || | || |||||||| ||
Sbjct 5608 ACCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556
Score = 100 bits (110), Expect = 6e-16
Identities = 161/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| |||| |||||| | || || || | ||||| || || |||||| || ||
Sbjct 6243 ATACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 6184
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||| || || |||| |||||||||||||| |||||||| | | || ||||| ||
Sbjct 6183 CTTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGA 6125
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| || ||| || || || || | || || | ||
Sbjct 6124 GGAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCA 6065
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||||| || || ||||| || || || | || || |||||
Sbjct 6064 ACTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015
>seq80618
Length=357
Score = 127 bits (140), Expect = 4e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| |||||||| | ||||| || || || || | |||| || || ||| || ||
Sbjct 357 AATGATACCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTA 298
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
|| || || || ||| |||| |||||||| || || || ||||| || | ||||||||
Sbjct 297 GTCGGACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATC 238
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||||| ||||||||||| ||||| || || || ||||| || | || || |
Sbjct 237 TGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGG 178
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||| ||||| | |||||||| |||||||| || || || | || |||||||||
Sbjct 177 TTCAACTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATT 123
>seq193759
Length=801
Score = 91.5 bits (100), Expect = 3e-13
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| | |||||| |||| || | || || ||| | ||||| || |||||||||
Sbjct 365 TCTTTTG-GATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAG 307
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| |||| |||||||| || || ||||| ||||| ||||| || || | | |||||
Sbjct 306 ATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTC 247
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAAT 192524
|||| | | || | |||| |||| | |||||||||||| ||| ||| ||||| |
Sbjct 246 TCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTA-CAGATAAGGGTTTTTAC 189
Query 192525 AAATATCTGCATT 192537
||| || || |||
Sbjct 188 AAAAATTTGAATT 176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981565729690350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |