Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54449 165 2e-35 seq112590 152 2e-31 seq229712 116 1e-20 seq230024 113 1e-19 seq188621 109 2e-18 seq47247 102 2e-16 >seq54449 Length=2482 Score = 165 bits (182), Expect = 2e-35 Identities = 568/877 (65%), Gaps = 9/877 (1%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || ||||| || ||| ||| || ||| || ||| || || || | ||| | || ||| Sbjct 1330 TACTCTACGATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTA 1389 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || ||||| |||||||| ||||| | || ||||| ||||| || || | |||| Sbjct 1390 CTCTTTCTGTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGAC 1449 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| |||||| | | || || |||| | |||| | | ||||| Sbjct 1450 TCAATAATTGCATACCAGAGTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCTTCATTT 1509 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCT-CACCGTAACAATCACTCAGTCCAGGGCA 155869 ||||| || ||||| || ||| ||| || |||| || ||| || ||| || || Sbjct 1510 TCATACTTAATATAGAGT-TTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACA 1568 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATC 155929 || | || || | || |||||| || | | | ||||| | |||||| | ||| Sbjct 1569 TTTGTGAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATC 1628 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCT 155988 ||| | ||| |||||||| || || || ||| || | || ||| || | Sbjct 1629 TGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTT-T 1687 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 || | || || ||||| |||||| | ||| || |||| ||| || || || Sbjct 1688 TCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATG 1747 Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 ||| ||||||| || || ||||||||||| || ||| ||||||||||| | || Sbjct 1748 CTCCAGGCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTA 1807 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| | |||||| ||||| ||||| ||||| |||| | || | | Sbjct 1808 ACATGGGAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCC 1867 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| | || | || || ||| || || |||| | || ||||| ||| |||| | Sbjct 1868 GAATACAGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTT 1927 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 || | ||||| || ||||| || ||||| ||||| ||| ||| | || ||| Sbjct 1928 CAACGGACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAG 1987 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACT 156345 |||||||| | |||||| |||| |||| || || | || |||||||||||| Sbjct 1988 ACAATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACC 2047 Query 156346 TATTAGACATATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACAG 156404 | | ||| | | || |||||||| | | || | || | | || ||||| | Sbjct 2048 TTTCAGATAAAAGATTATATGTCTCAAT-AGCTGCATCTATGTCGTTTCCATGAATTCCT 2106 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGA 156464 | || ||| ||||| ||| || ||||| | || |||| ||||| || || | Sbjct 2107 ACAGCGACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAA 2166 Query 156465 AGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 || |||| ||| |||| |||||||| || || |||| Sbjct 2167 AGATATGAGCGCTCCAATGTTTTAAATCCAAAGTAAT 2203 >seq112590 Length=440 Score = 152 bits (168), Expect = 2e-31 Identities = 224/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| |||||| | ||| ||||| ||||||||||||||||| |||| || | || Sbjct 396 TTTTGCACCAACCGAATCGATTTCATCAATGAAAATCACACATGGAGCGCGTTCCTTAGC 337 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | | ||||| ||||| ||||| ||||| | ||||| | | ||| ||||||| Sbjct 336 AGCTTTGAATAAATCTCTCACACGCCGAGCTCCCTGGCCAACCAAGACTTCGTCAAATTC 277 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | | | | || | ||| | ||| | ||||| || ||||| || || || || | Sbjct 276 AGGACCAGCGGCATGGAAGAAGGGTACTCTAGCTTCTCCAGCTACAGCTCTTGCTAGTAA 217 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||||| || ||||| ||||| || | |||| |||||| || |||| ||| | || | Sbjct 216 AGTCTTCCCCGTTCCTGGTGGACCAACCAATAAAACTCCTTTAGGTAACTTTCCACC--C 159 Query 289263 AGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| | | ||||||||| ||||||||||||| |||| |||| ||| || | ||| Sbjct 158 AAACTTGAAAACTTCTCAGGGTTCTTTAAAAATTCAACAACCTCCTTAAGCTCTTGTTTG 99 Query 289321 GCCTCATCACATCCT 289335 || ||||| || ||| Sbjct 98 GCTTCATCGCAACCT 84 >seq229712 Length=7130 Score = 116 bits (128), Expect = 1e-20 Identities = 225/331 (68%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||| ||||| || || || | | || |||| || || || || || || Sbjct 4031 ACCAACAGCATCGATTTCATCGATAAAGAGAATGCATGGAGCATGTTTCCTAGCCATAGC 3972 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | || | | | ||||| ||| ||| ||||||| | || |||||| | Sbjct 3971 AAACATGTCACGCACTCTGCTAGGTCCAACACCGACAAACATTTCCAAGAACTCAGAACC 3912 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || ||| ||||||| ||||||||||| || ||| ||| | || || ||||| || Sbjct 3911 AGAAACTGTGATGAATGGAACATTTGCTTCTCCAGCTGTGGCCTTTGCGAGGAGTGTTTT 3852 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||| ||||| || ||||| | | | |||| || || | ||| || ||| | | Sbjct 3851 ACCAGTTCCTGGAGGTCCAGTGAGCATAGCTCCTTTGGGAATTTTAGCACCAAGATCAAT 3792 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||| | |||| |||| || || | ||| | ||| || |||| ||| || || || Sbjct 3791 GTATTGTTGAGGGTTCTTCAAGAAGTTTACGAACTCCATAATTTCAATTTTAGCTTCCTC 3732 Query 289329 ACATCCTGCTACATCAGCAAAA-GTAATATT 289358 ||||| || || || |||| | |||||| Sbjct 3731 GCATCCAGCAACGTCCCTAAAATGGAATATT 3701 >seq230024 Length=7895 Score = 113 bits (124), Expect = 1e-19 Identities = 190/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| || |||||||||||| || || |||||||| ||| Sbjct 4472 TCCATAGCCTTTATAAGACGACGTTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTA 4413 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| |||||||| || || | | |||| ||| | || Sbjct 4412 TCAATAAGACCTTCACGACCTCCCATAGCGTGAAAATAGAACTCTGATGGTGTCAAACCG 4353 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || |||||||| | | || || || ||||||| |||| | Sbjct 4352 GCAAGGTATGAATTTTCTACGAAACCTCTAGATTCAGGACCGTAATCGTC---CTTGATG 4296 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || || ||| |||| | || ||||| || || || |||||||| Sbjct 4295 AAATGTGGCAAAGTTCTCTTCCTGAAGCCAAACGGAATACGTTTACCTTCTACGTTCTGT 4236 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | ||| |||||||| Sbjct 4235 TGCCCTACACAAGCAATAACCTGGGAAATATT 4204 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 301783 GATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAATACGGGGAACACCACGG 301842 |||||| ||||| || | ||| | | | |||||| | || | ||| |||||| || Sbjct 5379 GATGGAGCCTTTGGTTTCTTCGAGATATTGATAATTTCCTTAAGTCTGGGTACACCAAGG 5320 Query 301843 GTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTA 301902 |||||||| |||||| | ||||||||||| |||||||| |||| || | ||||| Sbjct 5319 GTTACGTT---CTTGGAAGACACACCAGCAAAATGGAAAGTGTTCAATGTCATCTGAGTG 5263 Query 301903 GTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCTGG 301952 | || || || | | ||| || || | ||| |||||||||||||| Sbjct 5262 GCAGGTTCTCCGAGAGATTGGGCAGCTAAAGCACCCACCATTTCTCCTGG 5213 >seq188621 Length=750 Score = 109 bits (120), Expect = 2e-18 Identities = 320/483 (66%), Gaps = 29/483 (6%) Strand=Plus/Plus Query 380903 TTAAAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGC---TAAAGGCAC 380959 || ||||||| | |||||| | | ||| | || ||| ||||| | ||| || Sbjct 136 TTGAAGAACTGTTGTGGTTTGTGAGAGGTCAAAC--CAATGTGAAGGTACTTCAAGACA- 192 Query 380960 AGAATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAA 381019 |||| | || |||||||||| |||| | | | || || |||||| ||||||| | Sbjct 193 AGAACATTAAGATCTGGAATGATAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTA 252 Query 381020 CCAATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACG 381079 | ||| ||||||| ||| | || || | || || ||||| ||| | |||||| | Sbjct 253 CAGATAGAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGG 312 Query 381080 CCGATTATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATA 381139 | || || | | |||| || |||||||||||| || || || |||||||||| || Sbjct 313 CTGAATACAAAACTTGTCATGATGATTATACTGGCAAAGGCGTTGACCAGTTAAGCCATG 372 Query 381140 TCATAGAC-CAGCTAAAA--AATCC---TGAAACAAGAAATTCACGCCGACTAATTATGA 381193 | || || || ||||| ||||| ||| | ||| | || || |||| Sbjct 373 TAATCCACACAATTAAAACCAATCCAAATGACAGAAGGATTT---GC---------ATGA 420 Query 381194 CTGCGTGGAATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCC 381253 | || ||||||||| | || | | ||||| | ||||| || |||| ||| | Sbjct 421 CAGCTTGGAATCCTGTGGACATCCCTAAAATGGCCCTTCCACCATGTCATAGTTTTGTAC 480 Query 381254 AGTTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGC-GGTGAT 381312 |||| ||||| ||| | || || |||| |||| || || | ||| |||||| Sbjct 481 AGTTTTATGTTCAAAATGG--AGAACTT-TCTTGTTCTTTGTACCAAAG-AGCTGGTGAT 536 Query 381313 GTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTACTCGTTTAATTGCT 381372 | ||| |||| ||||||||||||||||| ||| | || | |||| | | |||||| Sbjct 537 ATGGGTTTGGGAGTTCCATTCAATATTGCCAGCTATGTTTTGTTAACTCATATGATTGCT 596 Query 381373 CAT 381375 ||| Sbjct 597 CAT 599 >seq47247 Length=7776 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| || ||||| || ||||| || || || || ||| | | Sbjct 6992 TGGCCAATTGTCATACGAGATGGGATAGCGTGAGGATTAATTATAATATCTGGTGTTAAG 6933 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTT-CCAATAGTTCCCTTTTG 251957 || |||| || ||||||||||| | || | | ||| || | ||| |||||||||||| Sbjct 6932 CCTTCAGATGTAAAGGGCATATCTTCTTGC-CTATATTGAATACCACAAGTTCCCTTTTG 6874 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 ||| ||||||||| || || || ||||| ||| |||||| ||||| |||| Sbjct 6873 TCCATGACGAGAAGCAAATTTGTCTCCAATTTGTGGAATACGAACAGAACGAACACGAAT 6814 Query 252018 CTTACAGAAGTTGTAACCATCACCGTTG 252045 ||||| || || || || |||| |||| Sbjct 6813 TTTACAAAACTTATATCCTTCACTGTTG 6786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467460706682817