Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq54449 192 5e-44 seq80618 158 1e-33 seq160753 156 4e-33 seq229830 143 2e-29 seq158956 84.2 2e-11 >seq54449 Length=2482 Score = 192 bits (212), Expect = 5e-44 Identities = 554/845 (66%), Gaps = 12/845 (1%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || ||||| || | ||| |||| || || ||||| || | | ||| |||||||| Sbjct 268 TTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCC 327 Query 138213 CGTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||||| | ||||| ||||| || |||| | || || ||||| | | | || | | Sbjct 328 TGTTTTCAGACCCAATTTCCAAG-CGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTG 386 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 ||| || | | || || || || ||||| ||||| || ||||| |||| |||| | Sbjct 387 GTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAG 446 Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 |||| | |||| | |||| | || ||||| || || || || || || | |||| Sbjct 447 CCATTTGAATTGTAGATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATAT 506 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTCT 138449 || || ||| || | || | ||| || | || |||| | ||| || ||| | Sbjct 507 GTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTT--GAAATAATTTCGTTTTT 564 Query 138450 CATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGAC 138509 ||| ||||||| | | || | || | ||||| || | || || ||||| || Sbjct 565 CATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTACAAC 624 Query 138510 CTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGA 138569 || || ||||| | ||||||||||| ||||| || || | || || || || Sbjct 625 TTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGA 684 Query 138570 TTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGA 138629 ||| |||||||||| ||| ||||| || | || || ||||| || | ||| | || Sbjct 685 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGA 744 Query 138630 ATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 ||| | || || |||| ||| ||| ||||| || | ||| ||||||||||| | Sbjct 745 ATTTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATCAGT 804 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 || |||||| ||||||||| || ||||| ||||| || | || || || || || Sbjct 805 TGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTCATA 864 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTA 138809 | || || ||| | || || | || || || || || || ||||| || Sbjct 865 TGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATAATA 924 Query 138810 AATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG 138869 ||| || || || |||||||| ||||| | |||| | || ||||| || || Sbjct 925 AATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGGATAACG 984 Query 138870 GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAG 138929 | | | || || || | | ||||| || || | |||| ||| | || || | Sbjct 985 CATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTGACGTAA 1044 Query 138930 ATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAA 138986 ||||||| ||| ||||| | |||||||| || ||||| || ||||||||||| Sbjct 1045 ATTTGAC---TTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTTTAA 1101 Query 138987 ATTTC 138991 ||||| Sbjct 1102 ATTTC 1106 Score = 156 bits (172), Expect = 4e-33 Identities = 395/592 (67%), Gaps = 19/592 (3%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | || | |||||||||||| || ||||| | |||||||||||| Sbjct 1330 TACTCTACGATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTA 1389 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 || |||| ||| |||||||||||||| | |||||| || || |||||||| ||||||| | Sbjct 1390 CTCTTTCTGTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGAC 1449 Query 139243 TCTATAA-TGAATTTGAACA-AGTCCCT-AGCTTGTATTTGACGCACGTAAAGTT---CG 139296 || |||| || || | || ||| | ||||| ||||| | || || | Sbjct 1450 TCAATAATTGCAT---ACCAGAGTTGTTGAGCTTTTATTT---TCCTGTTTGCTTTTCCT 1503 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || || ||||| ||||||| || ||| |||||| | | || | || Sbjct 1504 TCATTTTCATACTTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCG 1563 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 |||| |||| ||||||||| || ||||| | ||| |||| || || |||| ||| Sbjct 1564 GGACATTTGTGAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAAC 1623 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 | ||| |||||||| |||||| | | | ||| | || || ||||| || || Sbjct 1624 AAATCTGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTG 1683 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || |||| | | || ||||||| || | ||||| ||||||| ||| || || Sbjct 1684 TTTTTCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCG 1743 Query 139537 ATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || || ||||| |||||||| || | ||| || |||||||||| || Sbjct 1744 AATGCTCCAGGCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACT 1803 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGC-- 139651 | ||||| || | | ||| | | ||||| || || | | || | |||| | Sbjct 1804 CTTAACATGGGAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAG--CTGTCCCTT 1861 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATAT 139703 ||| || | |||||||| | ||||||||||| || | ||||| || Sbjct 1862 TAGCCCGAATACAGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAAT 1913 >seq80618 Length=357 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || ||||| || ||||| | ||||| ||| | || Sbjct 124 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTCC 183 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||||||||||||||| || || |||||| Sbjct 184 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAA 243 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || || |||| ||| | | | |||| || || ||| Sbjct 244 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAAC 303 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||||||||| || || |||||||||||||| Sbjct 304 ATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCG 338 >seq160753 Length=592 Score = 156 bits (172), Expect = 4e-33 Identities = 170/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || |||||||| || || ||||| || |||| | Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGA-GCCATC 305 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| ||| | || ||| ||||| || ||||| || ||||| |||| Sbjct 304 AGACACCATTGAGAACGTTAAGGCTAA-GATTCAAGATAAGGAAGGTATCCCTCCAGATC 246 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTAT 24880 |||||||||||||||| ||||| || ||| |||| ||| || |||| |||||||||| Sbjct 245 AACAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATG-GACGCACATTGTCAGATTAT 187 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| || || || || ||||| ||||| Sbjct 186 AACATTCAAAAGGAGTCAACCCTTCATTTGGTATTGCG 149 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | || || |||||||| || || ||||| ||| | | Sbjct 591 ATGCAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCT 532 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||| || ||||||||||| ||||| ||||| Sbjct 531 GACACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAG 472 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCAGATTATAA 24882 |||||||||||||| || || ||||| |||| ||| || |||| ||||||||||| Sbjct 471 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATG-GACGCACATTATCAGATTATAA 413 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 412 CATCCAAAAGGAGTCAACTCTTCACTTGGT 383 >seq229830 Length=7395 Score = 143 bits (158), Expect = 2e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || ||||| || || | ||||| || | | Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||||||||||||||| || ||||| |||||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 ||||||||||||||||| || ||||| |||| || || ||| ||||||| ||||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGA-CGGACGCACATTGTCAGACTATAA 5965 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||| ||||| ||||| || || || || || Sbjct 5966 CATTCAAAAAGAATCTACACTCCATTTAGTATTACG 6001 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || |||||||| ||||| | || || ||| | || Sbjct 5559 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCC 5618 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || ||||| |||||||| || || || || Sbjct 5619 GATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 5678 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| || || ||||| |||| ||| | | || ||||| ||| Sbjct 5679 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTACAAC 5738 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| || || |||||||| ||||| | || ||||| Sbjct 5739 ATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGG 5785 Score = 113 bits (124), Expect = 4e-20 Identities = 169/232 (73%), Gaps = 11/232 (5%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || |||||||| | ||||| || |||| | Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGA-GCCATC 6073 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| |||||||||||||| || ||||| |||| Sbjct 6074 TGACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATC- 6132 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATT 24878 ||||||| | ||||||||||| ||||| |||| ||| ||| || | | | || | Sbjct 6133 ACAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCG---CAC-TTTAAGCGACT 6188 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | || || ||||||||||| || || |||||||| | || | || ||||| Sbjct 6189 ACAATATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGG 6240 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || ||||| |||||||| ||| | || |||||||| || Sbjct 23 AAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACAGCGTCTCATTTTTGCCGGAAAG 82 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||| | | | || |||||||||||||| ||||| || || ||| Sbjct 83 CAGCTCGAAGATGGCCGCACTCTTAGCGACTATAACATTCAAAAAGAATCTACTCTCCAC 142 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| | |||||||| Sbjct 143 TTGGTCTTGCGTCTTCGCGGAGG 165 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 24806 GGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGA 24865 || || ||||| ||||||||||||||||| || || || ||||| |||| || | || Sbjct 7279 GGTATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA-TGGACG 7337 Query 24866 AACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||||||||||| |||||||| || || || |||||||| Sbjct 7338 CACATTGTCAGATTATAACATCCAAAAGGAGTCAACTCTTCACTTGGT 7385 >seq158956 Length=585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||||| | |||| || || | |||||||||||||||||||||||||| || |||| Sbjct 187 CCGACACCATTGAAAATGTCAAGGACAAGATCCAAGACAAAGAAGGAATACCACCAGATC 246 Query 24822 AACAACGTTTGATCTTTGC 24840 ||||| |||||||||| || Sbjct 247 AACAATGTTTGATCTTCGC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448598290107480