Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq160753 156 3e-33
seq229830 152 4e-32
seq80618 125 5e-24
seq193759 91.5 1e-13
>seq160753
Length=592
Score = 156 bits (172), Expect = 3e-33
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| || || || ||||| ||||||||||| | | |||||
Sbjct 376 ACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCC 435
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | |||||||||||| | ||||| | ||||||||| || || || || |||||
Sbjct 436 ATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTT 495
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || | || ||||| |||| | |||||||| |||| |||||||| || ||
Sbjct 496 ATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGAT 555
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||||||| |||||||| || || ||||||||
Sbjct 556 AGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591
Score = 127 bits (140), Expect = 2e-24
Identities = 162/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629
||||| ||||||||||| || || || ||||||||||||||||| | |||| |||||
Sbjct 148 ACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAAT-GTGCGTC 206
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| || | || || || || | ||||| | ||| ||||| || || ||||| || |
Sbjct 207 CATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCT 266
Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
| ||||| ||| || | || || | || | ||||| || | || |||||||| ||
Sbjct 267 TATCTTG-AATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTG 325
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| ||||| || ||||| || || ||||||||
Sbjct 326 ATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363
>seq229830
Length=7395
Score = 152 bits (168), Expect = 4e-32
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618
||||| || | ||| | || ||||| || || |||||||||||||||||||| || | |
Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|||| |||| || || | ||||||||||||| | ||||| | ||| ||||| || ||
Sbjct 5953 AATG-TGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 5895
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||| ||||||||||| | || || || |||| | ||||||||| | || ||
Sbjct 5894 AATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAAC 5835
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | || || ||||| ||||| |||||||| || || || |||||
Sbjct 5834 TTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787
Score = 138 bits (152), Expect = 9e-28
Identities = 173/232 (75%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618
||||| | | ||||| ||||| ||||| || ||||||||||||||||| ||||| | |
Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| | |||| ||| || | |||||||||||| | ||||| | |||||| || || ||
Sbjct 5725 AAAG-TGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 5667
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|| || || ||||| || |||||| | ||| ||| |||| | ||| || || |||| |
Sbjct 5666 GATTCCTTCCTTGTCCTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 5608
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || | || || ||||| ||||| || || || || || |||||||| ||
Sbjct 5607 CCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556
Score = 113 bits (124), Expect = 3e-20
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| || ||||| ||||| || ||||| ||||| || || || ||
Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || | |||||| || ||| | || | | ||| ||||| || |||
Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| ||||||||||| ||| || | ||||| |||| | |||||||| | || ||
Sbjct 6121 ATACCTTCTTTGTCTTG-AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAAC 6063
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| | || ||||| || ||||| || || || || || || |||||
Sbjct 6062 TTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/116 (78%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629
||| || ||||| ||||| || || || ||||| ||||||||||| | ||||| ||||
Sbjct 7392 ACGGAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGACAATG-TGCGTC 7334
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCC 29685
||| || | |||||||||||| | ||||| | ||| ||||| || |||||||||
Sbjct 7333 CATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCC 7278
>seq80618
Length=357
Score = 125 bits (138), Expect = 5e-24
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| |||||| ||||| || ||||| ||||| ||||| || || | | ||||||
Sbjct 339 ACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCC 280
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | ||| || || || | ||||| | ||| ||||| || || || || |||||
Sbjct 279 ATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTT 220
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || |||||| |||| | ||||| ||| |||| ||||| | || ||
Sbjct 219 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAAT 160
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || ||||| || || || || || |||||||||
Sbjct 159 GGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATT 123
>seq193759
Length=801
Score = 91.5 bits (100), Expect = 1e-13
Identities = 114/150 (76%), Gaps = 5/150 (3%)
Strand=Plus/Minus
Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699
||| ||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| ||
Sbjct 322 TTGCTTGCCAGCAAAGATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTG-AA 264
Query 29700 TTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758
| || | | | ||| | || | ||| | ||| ||||| |||| | || || |||||
Sbjct 263 TCTTGGCTATAACATTCTCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTT-A 206
Query 29759 CAGTTAA-GGTTTTAACAAATATCTGCATT 29787
||| ||| |||||| ||||| || || |||
Sbjct 205 CAGATAAGGGTTTTTACAAAAATTTGAATT 176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384134495081781
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |