Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq160753 156 3e-33 seq229830 152 4e-32 seq80618 125 5e-24 seq193759 91.5 1e-13 >seq160753 Length=592 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||| ||||||||||| | | ||||| Sbjct 376 ACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCC 435 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||||||||| | ||||| | ||||||||| || || || || ||||| Sbjct 436 ATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTT 495 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||||| |||| | |||||||| |||| |||||||| || || Sbjct 496 ATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGAT 555 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| |||||||| || || |||||||| Sbjct 556 AGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Score = 127 bits (140), Expect = 2e-24 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| ||||||||||| || || || ||||||||||||||||| | |||| ||||| Sbjct 148 ACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAAT-GTGCGTC 206 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || || || || | ||||| | ||| ||||| || || ||||| || | Sbjct 207 CATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCT 266 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| ||| || | || || | || | ||||| || | || |||||||| || Sbjct 267 TATCTTG-AATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTG 325 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| || ||||| || || |||||||| Sbjct 326 ATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 >seq229830 Length=7395 Score = 152 bits (168), Expect = 4e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| || | ||| | || ||||| || || |||||||||||||||||||| || | | Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 5953 AATG-TGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 5895 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| ||||||||||| | || || || |||| | ||||||||| | || || Sbjct 5894 AATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAAC 5835 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| ||||| |||||||| || || || ||||| Sbjct 5834 TTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 138 bits (152), Expect = 9e-28 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||||| ||||| ||||| || ||||||||||||||||| ||||| | | Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | |||| ||| || | |||||||||||| | ||||| | |||||| || || || Sbjct 5725 AAAG-TGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 5667 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || |||||| | ||| ||| |||| | ||| || || |||| | Sbjct 5666 GATTCCTTCCTTGTCCTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 5608 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || | || || ||||| ||||| || || || || || |||||||| || Sbjct 5607 CCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 113 bits (124), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || ||||| ||||| || || || || Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||| || ||| | || | | ||| ||||| || ||| Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | ||||| |||| | |||||||| | || || Sbjct 6121 ATACCTTCTTTGTCTTG-AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAAC 6063 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || ||||| || ||||| || || || || || || ||||| Sbjct 6062 TTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || ||||| ||||| || || || ||||| ||||||||||| | ||||| |||| Sbjct 7392 ACGGAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGACAATG-TGCGTC 7334 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCC 29685 ||| || | |||||||||||| | ||||| | ||| ||||| || ||||||||| Sbjct 7333 CATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCC 7278 >seq80618 Length=357 Score = 125 bits (138), Expect = 5e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| || ||||| ||||| ||||| || || | | |||||| Sbjct 339 ACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCC 280 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || || || | ||||| | ||| ||||| || || || || ||||| Sbjct 279 ATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTT 220 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| |||| | ||||| ||| |||| ||||| | || || Sbjct 219 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAAT 160 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || || || ||||||||| Sbjct 159 GGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATT 123 >seq193759 Length=801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/150 (76%), Gaps = 5/150 (3%) Strand=Plus/Minus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| ||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| || Sbjct 322 TTGCTTGCCAGCAAAGATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTG-AA 264 Query 29700 TTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 | || | | | ||| | || | ||| | ||| ||||| |||| | || || ||||| Sbjct 263 TCTTGGCTATAACATTCTCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTT-A 206 Query 29759 CAGTTAA-GGTTTTAACAAATATCTGCATT 29787 ||| ||| |||||| ||||| || || ||| Sbjct 205 CAGATAAGGGTTTTTACAAAAATTTGAATT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384134495081781