Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq188621 102 1e-16
seq226481 95.1 2e-14
seq194783 91.5 2e-13
seq47247 89.7 7e-13
seq230506 82.4 1e-10
>seq188621
Length=750
Score = 102 bits (112), Expect = 1e-16
Identities = 254/376 (68%), Gaps = 15/376 (4%)
Strand=Plus/Plus
Query 180486 TTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTC 180545
|||| | |||||||||||| | | | | || |||||| ||||| || |
Sbjct 199 TTAAGATCTGGAATGATAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTACAGATA 258
Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605
|| ||||||| || || |||||| | ||||| ||||||||| | ||| || ||| |||
Sbjct 259 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGGCTGAAT 318
Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665
| | ||| || | |||| || |||| | ||||| |||||||| || ||
Sbjct 319 ACAAAACTTGTCATGATGATTATACTGGCAAAGGCGTTGACCAGTTAAGCCATGTAATCC 378
Query 180666 AAACTATAAAAAATAATCCCGAATG-CCGAAGAATAATCATAGATAG-TTGGAAT-GTAT 180722
| || || |||| ||| || |||| | |||| || ||| || || ||||||| | |
Sbjct 379 ACACAATTAAAACCAAT-CCAAATGACAGAAGGATTTGCAT-GACAGCTTGGAATCCTGT 436
Query 180723 -CACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGA 180781
||| | || | ||||| |||||||||||||| |||| ||||| ||||||||| |
Sbjct 437 GGACA--TCCCTAAAATGGCCCTTCCACCATGTCATAGTTTTGTACAGTTTTATGTTCAA 494
Query 180782 AAT--AAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTG 180839
||| | || || ||| ||||| |||||| ||| ||| | || || || |
Sbjct 495 AATGGAGAACTT-----TCTTGTTCTTTGTACCAAAGAGCTGGTGATATGGGTTTGGGAG 549
Query 180840 TACCATATAATATTGC 180855
| |||| ||||||||
Sbjct 550 TTCCATTCAATATTGC 565
>seq226481
Length=4705
Score = 95.1 bits (104), Expect = 2e-14
Identities = 124/170 (73%), Gaps = 10/170 (6%)
Strand=Plus/Minus
Query 120198 TATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGCG 120257
||||| || ||||| |||||||||||||| | ||||| || || || || || ||
Sbjct 2466 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTCGGTGCA 2407
Query 120258 GGTGTTATTGATGAAGATTATCCCAATGAGTTAAT----GA-TTATTTTGCACAACCATT 120312
|| ||| ||||||||||||||| | | ||| || || ||||| ||| ||||
Sbjct 2406 GGAGTTGTTGATGAAGATTATC-----GTGGAAATCTTGGAGTTGTTTTGTTCAATCATT 2352
Query 120313 CAGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAAATTATT 120362
| ||||| |||||| | || | |||||| |||||||||||| |||||
Sbjct 2351 CCGACACTGATTTCGAGGTCAAGAAAGGGGACAGAATTGCCCAACTTATT 2302
>seq194783
Length=813
Score = 91.5 bits (100), Expect = 2e-13
Identities = 213/313 (68%), Gaps = 9/313 (3%)
Strand=Plus/Minus
Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605
|| ||||||| || || |||||| | ||||| ||||||||| | ||| || ||| |||
Sbjct 530 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTCGGGGCTGAAT 471
Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665
| | ||| | | | |||| || |||| | ||||| || ||| | || ||
Sbjct 470 ACAAAACTTGTCACGACGATTATACTGGAAAAGGCGTTGACCAGTTGAGCAATGTAATCC 411
Query 180666 AAACTATAAAAAATAATCCCGAATGCC-GAAGAATAATCATAGATAG-TTGGAATG-TAT 180722
| || || |||| ||||| |||| | |||| || ||| || || ||||||| | |
Sbjct 410 ACACAATTAAAACCAATCCA-AATGACAGAAGGATTTGCAT-GACAGCTTGGAATCCTGT 353
Query 180723 CACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAA 180782
||| ||| | ||||| || ||||||||||| |||| ||||| ||||||||| ||
Sbjct 352 GGACATT-CCAAAAATGGCCCTCCCACCATGTCATAGTTTTGTACAGTTTTATGTTCAAA 294
Query 180783 ATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTAC 180842
|| | | | ||| ||||| |||||| ||| |||| | | ||||| || |
Sbjct 293 ATGGA---GAGCTTTCTTGTTCTTTGTACCAAAGAGCTGGAGATATGGCTTTAGGAGTTC 237
Query 180843 CATATAATATTGC 180855
||| ||||||||
Sbjct 236 CATTCAATATTGC 224
>seq47247
Length=7776
Score = 89.7 bits (98), Expect = 7e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGG 201625
||||| ||| |||||||||| |||||| |||| | |||| | |||| |||||||||||
Sbjct 6832 CGTATTCCACAAATTGGAGACAAATTTGCTTCTCGTCATGGAC-AAAAGGGAACTTGTGG 6890
Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTAT 201685
||| ||| |||||||||||||| |||||| || | || || ||||||||
Sbjct 6891 TATTCAATATAGGCAAGAAGATATGCCCTTTACATCTGAAGGCTTAACACCAGATATTAT 6950
Query 201686 AATCAATCCAAATTGTATACCATCAAGAATGACCAT 201721
||| ||||| | ||| ||||| | ||||| ||
Sbjct 6951 AATTAATCCTCACGCTATCCCATCTCGTATGACAAT 6986
>seq230506
Length=9938
Score = 82.4 bits (90), Expect = 1e-10
Identities = 121/170 (71%), Gaps = 10/170 (6%)
Strand=Plus/Minus
Query 120198 TATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGCG 120257
||||| || ||||| |||||||||||||| | ||||| || || || || || ||
Sbjct 5962 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTTGGTGCA 5903
Query 120258 GGTGTTATTGATGAAGATTATCCCAATGAGTTAAT----GA-TTATTTTGCACAACCATT 120312
|| ||| ||||||| ||||||| | | ||| || || ||||| ||| ||||
Sbjct 5902 GGAGTTGTTGATGAGGATTATC-----GTGGAAATCTTGGAGTTGTTTTGTTCAATCATT 5848
Query 120313 CAGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAAATTATT 120362
| || || |||||| | || || |||| | ||||||||| || |||||
Sbjct 5847 CCGATACTGATTTCGAGGTCGAGAAAGGGAACAGAATTGCCAAACTTATT 5798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 653387543169000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |