Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq188621 102 1e-16 seq226481 95.1 2e-14 seq194783 91.5 2e-13 seq47247 89.7 7e-13 seq230506 82.4 1e-10 >seq188621 Length=750 Score = 102 bits (112), Expect = 1e-16 Identities = 254/376 (68%), Gaps = 15/376 (4%) Strand=Plus/Plus Query 180486 TTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTC 180545 |||| | |||||||||||| | | | | || |||||| ||||| || | Sbjct 199 TTAAGATCTGGAATGATAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTACAGATA 258 Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 || ||||||| || || |||||| | ||||| ||||||||| | ||| || ||| ||| Sbjct 259 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGGCTGAAT 318 Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665 | | ||| || | |||| || |||| | ||||| |||||||| || || Sbjct 319 ACAAAACTTGTCATGATGATTATACTGGCAAAGGCGTTGACCAGTTAAGCCATGTAATCC 378 Query 180666 AAACTATAAAAAATAATCCCGAATG-CCGAAGAATAATCATAGATAG-TTGGAAT-GTAT 180722 | || || |||| ||| || |||| | |||| || ||| || || ||||||| | | Sbjct 379 ACACAATTAAAACCAAT-CCAAATGACAGAAGGATTTGCAT-GACAGCTTGGAATCCTGT 436 Query 180723 -CACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGA 180781 ||| | || | ||||| |||||||||||||| |||| ||||| ||||||||| | Sbjct 437 GGACA--TCCCTAAAATGGCCCTTCCACCATGTCATAGTTTTGTACAGTTTTATGTTCAA 494 Query 180782 AAT--AAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTG 180839 ||| | || || ||| ||||| |||||| ||| ||| | || || || | Sbjct 495 AATGGAGAACTT-----TCTTGTTCTTTGTACCAAAGAGCTGGTGATATGGGTTTGGGAG 549 Query 180840 TACCATATAATATTGC 180855 | |||| |||||||| Sbjct 550 TTCCATTCAATATTGC 565 >seq226481 Length=4705 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/170 (73%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 120198 TATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGCG 120257 ||||| || ||||| |||||||||||||| | ||||| || || || || || || Sbjct 2466 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTCGGTGCA 2407 Query 120258 GGTGTTATTGATGAAGATTATCCCAATGAGTTAAT----GA-TTATTTTGCACAACCATT 120312 || ||| ||||||||||||||| | | ||| || || ||||| ||| |||| Sbjct 2406 GGAGTTGTTGATGAAGATTATC-----GTGGAAATCTTGGAGTTGTTTTGTTCAATCATT 2352 Query 120313 CAGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAAATTATT 120362 | ||||| |||||| | || | |||||| |||||||||||| ||||| Sbjct 2351 CCGACACTGATTTCGAGGTCAAGAAAGGGGACAGAATTGCCCAACTTATT 2302 >seq194783 Length=813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 213/313 (68%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 || ||||||| || || |||||| | ||||| ||||||||| | ||| || ||| ||| Sbjct 530 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTCGGGGCTGAAT 471 Query 180606 ATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAG 180665 | | ||| | | | |||| || |||| | ||||| || ||| | || || Sbjct 470 ACAAAACTTGTCACGACGATTATACTGGAAAAGGCGTTGACCAGTTGAGCAATGTAATCC 411 Query 180666 AAACTATAAAAAATAATCCCGAATGCC-GAAGAATAATCATAGATAG-TTGGAATG-TAT 180722 | || || |||| ||||| |||| | |||| || ||| || || ||||||| | | Sbjct 410 ACACAATTAAAACCAATCCA-AATGACAGAAGGATTTGCAT-GACAGCTTGGAATCCTGT 353 Query 180723 CACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAA 180782 ||| ||| | ||||| || ||||||||||| |||| ||||| ||||||||| || Sbjct 352 GGACATT-CCAAAAATGGCCCTCCCACCATGTCATAGTTTTGTACAGTTTTATGTTCAAA 294 Query 180783 ATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTAC 180842 || | | | ||| ||||| |||||| ||| |||| | | ||||| || | Sbjct 293 ATGGA---GAGCTTTCTTGTTCTTTGTACCAAAGAGCTGGAGATATGGCTTTAGGAGTTC 237 Query 180843 CATATAATATTGC 180855 ||| |||||||| Sbjct 236 CATTCAATATTGC 224 >seq47247 Length=7776 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGG 201625 ||||| ||| |||||||||| |||||| |||| | |||| | |||| ||||||||||| Sbjct 6832 CGTATTCCACAAATTGGAGACAAATTTGCTTCTCGTCATGGAC-AAAAGGGAACTTGTGG 6890 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTAT 201685 ||| ||| |||||||||||||| |||||| || | || || |||||||| Sbjct 6891 TATTCAATATAGGCAAGAAGATATGCCCTTTACATCTGAAGGCTTAACACCAGATATTAT 6950 Query 201686 AATCAATCCAAATTGTATACCATCAAGAATGACCAT 201721 ||| ||||| | ||| ||||| | ||||| || Sbjct 6951 AATTAATCCTCACGCTATCCCATCTCGTATGACAAT 6986 >seq230506 Length=9938 Score = 82.4 bits (90), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 120198 TATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGCG 120257 ||||| || ||||| |||||||||||||| | ||||| || || || || || || Sbjct 5962 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTTGGTGCA 5903 Query 120258 GGTGTTATTGATGAAGATTATCCCAATGAGTTAAT----GA-TTATTTTGCACAACCATT 120312 || ||| ||||||| ||||||| | | ||| || || ||||| ||| |||| Sbjct 5902 GGAGTTGTTGATGAGGATTATC-----GTGGAAATCTTGGAGTTGTTTTGTTCAATCATT 5848 Query 120313 CAGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCAAATTATT 120362 | || || |||||| | || || |||| | ||||||||| || ||||| Sbjct 5847 CCGATACTGATTTCGAGGTCGAGAAAGGGAACAGAATTGCCAAACTTATT 5798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653387543169000