Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq188621 93.3 5e-14
seq230506 87.8 2e-12
seq226481 87.8 2e-12
seq47247 82.4 1e-10
>seq188621
Length=750
Score = 93.3 bits (102), Expect = 5e-14
Identities = 248/373 (66%), Gaps = 11/373 (3%)
Strand=Plus/Plus
Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730
|||| | |||||||||||| | | | || || |||||| ||| || |||| || |
Sbjct 199 TTAAGATCTGGAATGATAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTACAGATA 258
Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790
|| ||||||| || || || ||| | ||||| ||||||||| | ||| |||||| |||
Sbjct 259 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGGCTGAAT 318
Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTA 171850
| | ||| || ||||| || || |||| || ||||| ||||| || ||
Sbjct 319 ACAAAACTTGTCATGATGATTATACTGGCAAAGGCGTTGACCAGTTAAGCCATGTAATCC 378
Query 171851 ATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAG-TTGGAATGTACCT 171909
| || | ||| ||| ||| | |||||||| || ||| || ||||||| |||
Sbjct 379 ACACAATTAAAACCAATCCAAATGACAGAAGGAT-TTGCATGACAGCTTGGAAT---CCT 434
Query 171910 ---CAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGa 171966
| | |||||||| ||||| || || || | ||| | ||| ||||||||
Sbjct 435 GTGGACATCCCTAAAATGGCCCTTCCACCATGTCATAGTTTTGTACAGTTTTATGT--TC 492
Query 171967 aaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTA 172026
|||| | ||| |||| || || |||||| | | |||| | || ||||| ||
Sbjct 493 AAAATGGAGAACTT-TCTTGTTCTTTGTACCAAAGAGCTGGTGATATGGGTTTGGGAGTT 551
Query 172027 CCTTATAATATTG 172039
|| | |||||||
Sbjct 552 CCATTCAATATTG 564
>seq230506
Length=9938
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 115141 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115200
||||||||| ||||| |||||||||||||| | |||||||| || || || || |||
Sbjct 5962 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTTGGTGCA 5903
Query 115201 GGTGTTGTCGATGAAGATTATCGAGATAATTTAATGGTTATTTTACATAACCATTCAGAT 115260
|| ||||| ||||| |||||||| | ||| | ||| |||| || ||||| |||
Sbjct 5902 GGAGTTGTTGATGAGGATTATCGTGGAAATCTTGGAGTTGTTTTGTTCAATCATTCCGAT 5843
Query 115261 GTTGATTT 115268
||||||
Sbjct 5842 ACTGATTT 5835
>seq226481
Length=4705
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 115141 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115200
||||||||| ||||| |||||||||||||| | |||||||| || || || || |||
Sbjct 2466 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTCGGTGCA 2407
Query 115201 GGTGTTGTCGATGAAGATTATCG 115223
|| ||||| ||||||||||||||
Sbjct 2406 GGAGTTGTTGATGAAGATTATCG 2384
>seq47247
Length=7776
Score = 82.4 bits (90), Expect = 1e-10
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051
||||| || |||| || || |||||| ||| | |||| | |||| |||||||||||
Sbjct 6832 CGTATTCCACAAATTGGAGACAAATTTGCTTCTCGTCATGGAC-AAAAGGGAACTTGTGG 6890
Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111
||| ||| |||||||||||||| |||||| || ||| | ||||||||||||
Sbjct 6891 TATTCAATATAGGCAAGAAGATATGCCCTTTACATCTGAAGGCTTAACACCAGATATTAT 6950
Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148
|||||||| | ||| || || | ||||| |||
Sbjct 6951 AATTAATCCTCACGCTATCCCATCTCGTATGACAATT 6987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626715994037760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |