Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq188621 93.3 5e-14 seq230506 87.8 2e-12 seq226481 87.8 2e-12 seq47247 82.4 1e-10 >seq188621 Length=750 Score = 93.3 bits (102), Expect = 5e-14 Identities = 248/373 (66%), Gaps = 11/373 (3%) Strand=Plus/Plus Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 |||| | |||||||||||| | | | || || |||||| ||| || |||| || | Sbjct 199 TTAAGATCTGGAATGATAATTGCACAAGAGATTTCTTAGATAAATGTGGTCTTACAGATA 258 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 || ||||||| || || || ||| | ||||| ||||||||| | ||| |||||| ||| Sbjct 259 GAGAAGAAGGAGACTTGGGACCAGTATATGGCTTTCAATGGCGTCATTTTGGGGCTGAAT 318 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTA 171850 | | ||| || ||||| || || |||| || ||||| ||||| || || Sbjct 319 ACAAAACTTGTCATGATGATTATACTGGCAAAGGCGTTGACCAGTTAAGCCATGTAATCC 378 Query 171851 ATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAG-TTGGAATGTACCT 171909 | || | ||| ||| ||| | |||||||| || ||| || ||||||| ||| Sbjct 379 ACACAATTAAAACCAATCCAAATGACAGAAGGAT-TTGCATGACAGCTTGGAAT---CCT 434 Query 171910 ---CAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGa 171966 | | |||||||| ||||| || || || | ||| | ||| |||||||| Sbjct 435 GTGGACATCCCTAAAATGGCCCTTCCACCATGTCATAGTTTTGTACAGTTTTATGT--TC 492 Query 171967 aaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTA 172026 |||| | ||| |||| || || |||||| | | |||| | || ||||| || Sbjct 493 AAAATGGAGAACTT-TCTTGTTCTTTGTACCAAAGAGCTGGTGATATGGGTTTGGGAGTT 551 Query 172027 CCTTATAATATTG 172039 || | ||||||| Sbjct 552 CCATTCAATATTG 564 >seq230506 Length=9938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 115141 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115200 ||||||||| ||||| |||||||||||||| | |||||||| || || || || ||| Sbjct 5962 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTTGGTGCA 5903 Query 115201 GGTGTTGTCGATGAAGATTATCGAGATAATTTAATGGTTATTTTACATAACCATTCAGAT 115260 || ||||| ||||| |||||||| | ||| | ||| |||| || ||||| ||| Sbjct 5902 GGAGTTGTTGATGAGGATTATCGTGGAAATCTTGGAGTTGTTTTGTTCAATCATTCCGAT 5843 Query 115261 GTTGATTT 115268 |||||| Sbjct 5842 ACTGATTT 5835 >seq226481 Length=4705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 115141 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115200 ||||||||| ||||| |||||||||||||| | |||||||| || || || || ||| Sbjct 2466 TATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCATCGATGTCGGTGCA 2407 Query 115201 GGTGTTGTCGATGAAGATTATCG 115223 || ||||| |||||||||||||| Sbjct 2406 GGAGTTGTTGATGAAGATTATCG 2384 >seq47247 Length=7776 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || || |||||| ||| | |||| | |||| ||||||||||| Sbjct 6832 CGTATTCCACAAATTGGAGACAAATTTGCTTCTCGTCATGGAC-AAAAGGGAACTTGTGG 6890 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 ||| ||| |||||||||||||| |||||| || ||| | |||||||||||| Sbjct 6891 TATTCAATATAGGCAAGAAGATATGCCCTTTACATCTGAAGGCTTAACACCAGATATTAT 6950 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 |||||||| | ||| || || | ||||| ||| Sbjct 6951 AATTAATCCTCACGCTATCCCATCTCGTATGACAATT 6987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626715994037760