Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 170 4e-37
seq80618 158 2e-33
seq160753 156 8e-33
seq193759 109 1e-18
seq43178 102 2e-16
>seq229830
Length=7395
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||||||||| | ||| | ||||| || || ||||||||||| || || ||||| || |
Sbjct 6015 TACCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTG 5956
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | |||||||| | |||||| ||||||||||| | | ||||||||||||||
Sbjct 5955 ACAATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 5896
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || ||||| ||||| || || || |||||||| || ||| ||| || |
Sbjct 5895 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAA 5836
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||| || || || || || ||||| || || || || || |||||
Sbjct 5835 CTTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787
Score = 170 bits (188), Expect = 4e-37
Identities = 176/229 (77%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||||| | ||| ||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 6242 TACCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGC 6183
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | | ||| ||||| | |||||| || |||||||| || | |||| |||||||||
Sbjct 6182 TTAAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAG 6124
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || ||||||||||| || || || |||||||| || ||| || || |
Sbjct 6123 GAATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAA 6064
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || ||||| || ||||| ||||| || || || |||||
Sbjct 6063 CTTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||||| || ||||| || || |||||||| || || || |||||
Sbjct 5787 TACCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGC 5728
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | || ||||| | |||||| ||||| ||||| | | ||| || ||||| |
Sbjct 5727 TCAAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGG 5668
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |
Sbjct 5667 GGATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 5608
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || || || || ||||| ||||| || || ||||||||
Sbjct 5607 CCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559
Score = 120 bits (132), Expect = 6e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||||| || ||||| |||||||||||||| || || ||||| ||
Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || ||||| ||||| || || | ||||||||||||||
Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747
|| |||||||| || || ||||| ||||| || |||||||| ||
Sbjct 45 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATGGT 2
>seq80618
Length=357
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || ||||| || |||||||| || || || || || || |
Sbjct 352 TACCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 293
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | || ||||| | ||| ||||| || ||||| | | |||||||||||| |
Sbjct 292 ACAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTG 233
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||| || ||||| ||||| || || ||||||||||| || || |||||| |
Sbjct 232 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAA 173
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||||| || || ||||| || ||||| ||||| || || |||||||||
Sbjct 172 CTTCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATT 123
>seq160753
Length=592
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| ||||| ||||| || || || || || |||||||| |
Sbjct 363 TACCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTG 422
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | || ||||| | |||||| ||||| ||||| | | ||| ||||||||||
Sbjct 423 ATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAG 482
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||| ||||| || ||||| || || || |||||||| || ||| ||||| |
Sbjct 483 GGATTCCTTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAA 542
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || || ||||| ||||| || || || || ||||||||
Sbjct 543 CTTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || || || || || || || || || || |||||||| |
Sbjct 135 TACCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTG 194
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | || ||||| | || ||||| || ||||| | | ||||||||||||||
Sbjct 195 ACAATGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAG 254
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||||||||||||||| || || || || ||||| || || || || |
Sbjct 255 GGATACCTTCCTTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAA 314
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || || || || ||||| || || || || ||||||||
Sbjct 315 CTTCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736
||||| | | ||||||||||||||| || ||||||||||| |||||||| || || ||
Sbjct 2 AAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAACG 61
Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796
|| || || || || ||||| ||||| ||||| || ||||| || ||||| || ||
Sbjct 62 TTCTCGATGGTGTCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTTG 121
Query 82797 ACAAATATCTGCAT 82810
|| || || |||||
Sbjct 122 ACGAAGATTTGCAT 135
>seq193759
Length=801
Score = 109 bits (120), Expect = 1e-18
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679
||||| || ||||| |||| || ||| | | || | || | ||| || |||||||||
Sbjct 365 TCTTT-TGGATATTGTAATTGGAAAGAGTACGGCCATATTTAAATTGCTTGCCAGCAAAG 307
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|| |||||||||||||||||| ||||| || || ||||||||||| ||| | |||||
Sbjct 306 ATCCATCTTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTATAACATTC 247
Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799
|| || ||| | ||||||| |||| || || || || || | | | || ||||||
Sbjct 246 TCGATAGTAACCGAAGGTTCT-CTTCGAAGGTAATGGTTTTACAGATAAGGGTTTTTACA 188
Query 82800 AATATCTGCATT 82811
|| || || |||
Sbjct 187 AAAATTTGAATT 176
>seq43178
Length=4857
Score = 102 bits (112), Expect = 2e-16
Identities = 209/307 (68%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 198147 GTTGAAACGTTTATAGATGAAATAATTATAAGAAGAGAACTGTCGGATAATTTTTGTTAC 198206
|||||| | ||| || ||| ||| | |||||||||| | ||||| ||||||| |
Sbjct 307 GTTGAAGCATTTTGTGAAGAAGCTATTGTTCGAAGAGAACTTGCTGATAACTTTTGTTTC 248
Query 198207 TATAATAAACATTACGATAG-CGTACAGTCTACTCACGCAT-GGGCTAGAAGAACATTAG 198264
|||||| || | ||||||| | | | | || | | || ||||| ||| ||| || |
Sbjct 247 TATAATGAAAACTACGATAAACTTTCGGGCT--TGAGTGATTGGGCTCGAAAAACCTTGG 190
Query 198265 AAGATCACATTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCGG 198324
| |||| ||| || |||| | | ||| ||| | | || | ||| | ||
Sbjct 189 ACAATCATCGTAAGGACAAAAGAAGTCCTTTGTATACTAAGACAGAATTGGAAGAAGCTA 130
Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384
|||| |||| | | ||||| || | ||||| || |||| | || || |||||||
Sbjct 129 AAACTTATGATGATTTGTGGAACTCAGCTCAAATTCAATTGATTAATGAGGGTAAAATGC 70
Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444
|| |||| || |||||||| ||||| || ||||| ||||||||||| | || ||||
Sbjct 69 ATGGTTTCTTGAGAATGTATTGGGCAAAGAAGATTCTTGAATGGACTTCTTCTCCAGAAG 10
Query 198445 ACGCTTT 198451
| |||||
Sbjct 9 AAGCTTT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 978920782542899
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