Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq43178 107 3e-18 >seq43178 Length=4857 Score = 107 bits (118), Expect = 3e-18 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 182830 GTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTAC 182889 |||||| | ||| || ||| ||||| |||||||||| | ||||| ||||||| | Sbjct 307 GTTGAAGCATTTTGTGAAGAAGCTATTGTTCGAAGAGAACTTGCTGATAACTTTTGTTTC 248 Query 182890 TATAATAAACATTACGATAGTGTT-CAGTCTACTCACGCAT-GGGCTAGAAGAACATTAG 182947 |||||| || | ||||||| || | | || | | || ||||| ||| ||| || | Sbjct 247 TATAATGAAAACTACGATAAACTTTCGGGCT--TGAGTGATTGGGCTCGAAAAACCTTGG 190 Query 182948 AAGATCACGTTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAG 183007 | |||| ||| || |||| | | ||| ||| | | || | ||| | || Sbjct 189 ACAATCATCGTAAGGACAAAAGAAGTCCTTTGTATACTAAGACAGAATTGGAAGAAGCTA 130 Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 |||| |||| | | ||||| || | ||||| || |||| | || || ||||||| Sbjct 129 AAACTTATGATGATTTGTGGAACTCAGCTCAAATTCAATTGATTAATGAGGGTAAAATGC 70 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 || |||| || ||||||| ||||| || ||||| ||||||||||| |||| |||| Sbjct 69 ATGGTTTCTTGAGAATGTATTGGGCAAAGAAGATTCTTGAATGGACTTCTTCTCCAGAAG 10 Query 183128 ATGCTTT 183134 | ||||| Sbjct 9 AAGCTTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900802137161760