Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq54491 89.7 7e-13 seq216245 86.0 8e-12 >seq54491 Length=5963 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 5691 CCAATCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCA 5750 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||| || |||| Sbjct 5751 ATTCCCCGTCGGGGAG 5766 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 5695 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 5754 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 5755 CCCGTCGGGGAG 5766 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 5766 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5707 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 5706 TACTATCGAGGATT 5693 >seq216245 Length=1448 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1382 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1441 Query 8718 CCCGACG 8724 |||| || Sbjct 1442 CCCGTCG 1448 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 11726 CCAG-TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 1377 CCAGATCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 1436 Query 11784 GATTCCCCGACG 11795 |||||||| || Sbjct 1437 AATTCCCCGTCG 1448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650959376057040