Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq226481 86.0 2e-12 seq230506 82.4 2e-11 >seq226481 Length=4705 Score = 86.0 bits (94), Expect = 2e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1363 TACCTCGTGGTTGTTACGGCAGAATAGCTCCAAGATCCGGTCTAGCGGCAAAGTATTCAA 1422 ||||| |||| || || || | ||||||||||| ||| |||| | || ||| | Sbjct 2480 TACCTGAAGGTTCCTATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCA 2421 Query 1423 TTGATGTGGGCGCTGGAGTTATTGACCCTGATTATCGTGGAAGTATCAGTGTTGTTTTAT 1482 | ||||| || || |||||| |||| ||||||||||||| | | | |||||||| | Sbjct 2420 TCGATGTCGGTGCAGGAGTTGTTGATGAAGATTATCGTGGAAATCTTGGAGTTGTTTTGT 2361 Query 1483 TTAATCATTCGGATGTGCCTTTCCATGTGTCGAGGGGAGACAGAATAGCTCAGTTAATTT 1542 | |||||||| || |||| | || || || |||||||| || || | |||| Sbjct 2360 TCAATCATTCCGACACTGATTTCGAGGTCAAGAAAGGGGACAGAATTGCCCAACTTATTT 2301 Query 1543 GTGAGCG 1549 |||| || Sbjct 2300 GTGAACG 2294 >seq230506 Length=9938 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 1363 TACCTCGTGGTTGTTACGGCAGAATAGCTCCAAGATCCGGTCTAGCGGCAAAGTATTCAA 1422 ||||| |||| || || || | ||||||||||| ||| |||| | || ||| | Sbjct 5976 TACCTGTAGGTTCCTATGGACGAGTTGCTCCAAGATCTGGTTTAGCTGTTAAAAATTTCA 5917 Query 1423 TTGATGTGGGCGCTGGAGTTATTGACCCTGATTATCGTGGAAGTATCAGTGTTGTTTTAT 1482 | ||||| || || |||||| |||| ||||||||||||| | | | |||||||| | Sbjct 5916 TCGATGTTGGTGCAGGAGTTGTTGATGAGGATTATCGTGGAAATCTTGGAGTTGTTTTGT 5857 Query 1483 TTAATCATTCGGATGTGCCTTTCCATGTGTCGAG---GGGAGACAGAATAGCTCAGTTAA 1539 | |||||||| ||| |||| | |||||| |||| ||||||| || | | | Sbjct 5856 TCAATCATTCCGATACTGATTTCGA--GGTCGAGAAAGGGA-ACAGAATTGCCAAACTTA 5800 Query 1540 TTTGTGAGCG 1549 ||||||| || Sbjct 5799 TTTGTGAACG 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139443568433632