Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq229830 100 3e-16 seq160753 100 3e-16 seq54449 87.8 2e-12 seq80618 82.4 7e-11 >seq229830 Length=7395 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || ||||| || || |||||||||| || ||| | | | || || | Sbjct 5764 AAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCA-TCTTCCAA 5706 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| ||| | || | || |||||||| || ||||| ||||||||||| ||| Sbjct 5705 TTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTC-CTGAA 5647 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | |||| || |||| || || || || | ||| | ||||| | Sbjct 5646 TTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTTTTAC 5587 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| || |||||||||||||| Sbjct 5586 CAGTCAAAGTCTTGACGAAAATCTGCAT 5559 >seq160753 Length=592 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || || ||||| || ||| | | | || || | Sbjct 158 AAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCA-TCTTCCAA 216 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | || || || || |||||||| |||||||| || || Sbjct 217 CTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAAT 276 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | ||||| || || | ||||| ||||| || Sbjct 277 CTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTTTCC 336 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||||||||| Sbjct 337 AGTCAAAGTTTTGACGAAAATCTGCAT 363 >seq54449 Length=2482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || || |||| ||| || ||||| | ||||| || || ||||||||||| || Sbjct 1285 GCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCA 1344 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| ||||| || || || || || || || | |||||| ||||| |||||||| Sbjct 1345 GTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAA 1404 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 || || ||||||| ||| || || |||||||| || || Sbjct 1405 GCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTG 1445 >seq80618 Length=357 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || ||||| ||| || ||| | | | || || | Sbjct 329 AAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA-TCTTCCAA 271 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | || || || || || ||||| ||||| ||||| ||| Sbjct 270 TTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGAT 211 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| || || || || | ||| | ||| || || Sbjct 210 CTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACC 151 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || |||||||||||||| Sbjct 150 AGTCAAAGTCTTGACGAAAATCTGCAT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482024674686840