Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq54449 250 6e-61 seq230024 93.3 1e-13 seq201263 87.8 4e-12 >seq54449 Length=2482 Score = 250 bits (276), Expect = 6e-61 Identities = 542/804 (67%), Gaps = 19/804 (2%) Strand=Plus/Minus Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 |||| | |||||||||||| || | | || || | || ||||||||| | || || | Sbjct 2142 TGAAAGACCTCAACACATGCTTATGAGAGTCGCTGTAGGAATTCATGGAAACGACATAGA 2083 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 || | |||||| ||| || | ||| | ||| | | |||||| || |||| || Sbjct 2082 TGCAGCTATTGAGACATATAATCTTTTATCTGAAAGGTATTTTATTCACGCCTCTCCAAC 2023 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGAC--AATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 ||||| || | || | ||| | ||||| |||| || ||||||||| ||| Sbjct 2022 GTTATTTGCTGCTGCCAC--ACCAAGGCCTCAATTGTCTTCATGTTTTCTTCTAACAATG 1965 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | ||||| || ||||| || | | | || || || |||| | ||||| || Sbjct 1964 TGCTCAGATTCCATAGAAGGGATCTTCAAGTCCGTTGAACAATGTGCTATGATTTCCAAG 1905 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | || ||||| || | | || || |||||| | ||||| || ||| || Sbjct 1904 TCTGCAGGCGGAATCGGATTAAATGTACACTGTATTCGGGCTAAAGGGACAGCTATTGCT 1845 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || || |||||| ||| | ||||| ||||||||||||||||| | ||| Sbjct 1844 GGAACTAATGGAACTTCAAATGGTTTAGTTCCCATGTTAAGAGTCTTCAATAATGTTGCC 1785 Query 110721 AAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 |||||| ||||||| || || ||| ||| |||| || || ||| | |||||| Sbjct 1784 CGATATGTAGATCAAGGAGGCAACAAGAGGCCTGGAGCATTCGCAATTTATTTGGAACCT 1725 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCA-AGGATTTGAAGAAC 110835 |||||||||||||| |||||||| || || || | | |||| || |||| ||||| Sbjct 1724 TGGCATTCAGATATTTTTGAATTTTTGGA--TTTGAAGAAAAACACAGGAAAAGAAGAGA 1667 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | |||| | ||| | || || || | |||||| ||||||| || |||||||||||| Sbjct 1666 ACCGAGCTAGAGATCTTTTCTACGCTTTATGGATTCCAGATTTGTTTATGAAACGTGTTG 1607 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | | | | |||||||||||||||||||| | ||| || | ||||| | Sbjct 1606 AGGCTGACGAAGATTGGTCTCTTATGTGTCCTCACAAATGTCCCGGATTGCACGATGTTT 1547 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015 || |||| ||||| | || || || |||||||| ||||| || |||||| Sbjct 1546 GGGGTGAAGAATTTGAGAAACTCTATATTAAGTATGAAAATGAAGGAAAA----GCAAAC 1491 Query 111016 A----AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 | ||| ||||||| |||| |||| ||| |||| |||||||| ||||||||| Sbjct 1490 AGGAAAATAAAAGCTCAACAACTCTGGTATGCAATTATTGAGTCACAAGTAGAAACTGGA 1431 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 ||||| ||||| ||||| |||||| | || | || ||||||| ||| | || Sbjct 1430 ACTCCATATATGTTGTACAAAGATGCTTGCAACAGAAAGAGTAATCAACAAAATGTTGGT 1371 Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155 |||||||||| ||||||| | ||| Sbjct 1370 ACAATTAAGTGTAGTAATCTCTGC 1347 >seq230024 Length=7895 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/165 (74%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| |||||||| | || || | ||||| |||||| |||||||| ||||| Sbjct 2984 GATTTGGTGGTGTTCAATCGTCAGCCCACCCTGCACAAAATGAGTATGATGGGTCATAGG 3043 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CGCCTTAT 305440 ||||||||||| | | | || || || | ||| | || |||||| | |||||| Sbjct 3044 GTCAAAGTATTGCCCTGGTCCAC-TTCCGTATGAATTT--GT-CTTGTACTTCCCCTTAT 3099 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || || |||||||| || ||||||||||| ||||||| || ||| Sbjct 3100 AACGCTGATTTTGACGGTGATGAAATGAACTTGCATGTGCCCCAA 3144 >seq201263 Length=906 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 167249 ACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 |||||||||||| |||||| |||| ||||||||||||||||| | || || || | | Sbjct 793 ACCAGCATTATCAAATTCAC-CGCAATAATTTGGTGCTGAAAACAGTGTCACCAACTGCC 735 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCA 167366 | | ||| |||||||||||||||||||| |||| ||| || | | | ||||| | Sbjct 734 GTCTTGCAAAGAATTCATAACCATCTTCAACGACTTGATGAGCTCTGCAAATCAAGTCGA 675 Query 167367 ACTCCTATTTTT 167378 |||| | ||||| Sbjct 674 ACTCTTGTTTTT 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183299581543401