Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 250 6e-61
seq230024 93.3 1e-13
seq201263 87.8 4e-12
>seq54449
Length=2482
Score = 250 bits (276), Expect = 6e-61
Identities = 542/804 (67%), Gaps = 19/804 (2%)
Strand=Plus/Minus
Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422
|||| | |||||||||||| || | | || || | || ||||||||| | || || |
Sbjct 2142 TGAAAGACCTCAACACATGCTTATGAGAGTCGCTGTAGGAATTCATGGAAACGACATAGA 2083
Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482
|| | |||||| ||| || | ||| | ||| | | |||||| || |||| ||
Sbjct 2082 TGCAGCTATTGAGACATATAATCTTTTATCTGAAAGGTATTTTATTCACGCCTCTCCAAC 2023
Query 110483 CCTATTTAACGCAGGAACTAATGGAGGAC--AATTGGCTTCTTGCTTTCTTCTAGGAATT 110540
||||| || | || | ||| | ||||| |||| || ||||||||| |||
Sbjct 2022 GTTATTTGCTGCTGCCAC--ACCAAGGCCTCAATTGTCTTCATGTTTTCTTCTAACAATG 1965
Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600
| ||||| || ||||| || | | | || || || |||| | ||||| ||
Sbjct 1964 TGCTCAGATTCCATAGAAGGGATCTTCAAGTCCGTTGAACAATGTGCTATGATTTCCAAG 1905
Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660
| || ||||| || | | || || |||||| | ||||| || ||| ||
Sbjct 1904 TCTGCAGGCGGAATCGGATTAAATGTACACTGTATTCGGGCTAAAGGGACAGCTATTGCT 1845
Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720
| | || || |||||| ||| | ||||| ||||||||||||||||| | |||
Sbjct 1844 GGAACTAATGGAACTTCAAATGGTTTAGTTCCCATGTTAAGAGTCTTCAATAATGTTGCC 1785
Query 110721 AAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777
|||||| ||||||| || || ||| ||| |||| || || ||| | ||||||
Sbjct 1784 CGATATGTAGATCAAGGAGGCAACAAGAGGCCTGGAGCATTCGCAATTTATTTGGAACCT 1725
Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCA-AGGATTTGAAGAAC 110835
|||||||||||||| |||||||| || || || | | |||| || |||| |||||
Sbjct 1724 TGGCATTCAGATATTTTTGAATTTTTGGA--TTTGAAGAAAAACACAGGAAAAGAAGAGA 1667
Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895
| |||| | ||| | || || || | |||||| ||||||| || ||||||||||||
Sbjct 1666 ACCGAGCTAGAGATCTTTTCTACGCTTTATGGATTCCAGATTTGTTTATGAAACGTGTTG 1607
Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955
| | | | |||||||||||||||||||| | ||| || | ||||| |
Sbjct 1606 AGGCTGACGAAGATTGGTCTCTTATGTGTCCTCACAAATGTCCCGGATTGCACGATGTTT 1547
Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015
|| |||| ||||| | || || || |||||||| ||||| || ||||||
Sbjct 1546 GGGGTGAAGAATTTGAGAAACTCTATATTAAGTATGAAAATGAAGGAAAA----GCAAAC 1491
Query 111016 A----AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071
| ||| ||||||| |||| |||| ||| |||| |||||||| |||||||||
Sbjct 1490 AGGAAAATAAAAGCTCAACAACTCTGGTATGCAATTATTGAGTCACAAGTAGAAACTGGA 1431
Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131
||||| ||||| ||||| |||||| | || | || ||||||| ||| | ||
Sbjct 1430 ACTCCATATATGTTGTACAAAGATGCTTGCAACAGAAAGAGTAATCAACAAAATGTTGGT 1371
Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155
|||||||||| ||||||| | |||
Sbjct 1370 ACAATTAAGTGTAGTAATCTCTGC 1347
>seq230024
Length=7895
Score = 93.3 bits (102), Expect = 1e-13
Identities = 122/165 (74%), Gaps = 7/165 (4%)
Strand=Plus/Plus
Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383
|||| ||| |||||||| | || || | ||||| |||||| |||||||| |||||
Sbjct 2984 GATTTGGTGGTGTTCAATCGTCAGCCCACCCTGCACAAAATGAGTATGATGGGTCATAGG 3043
Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CGCCTTAT 305440
||||||||||| | | | || || || | ||| | || |||||| | ||||||
Sbjct 3044 GTCAAAGTATTGCCCTGGTCCAC-TTCCGTATGAATTT--GT-CTTGTACTTCCCCTTAT 3099
Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
|| || |||||||| || ||||||||||| ||||||| || |||
Sbjct 3100 AACGCTGATTTTGACGGTGATGAAATGAACTTGCATGTGCCCCAA 3144
>seq201263
Length=906
Score = 87.8 bits (96), Expect = 4e-12
Identities = 101/132 (77%), Gaps = 3/132 (2%)
Strand=Plus/Minus
Query 167249 ACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307
|||||||||||| |||||| |||| ||||||||||||||||| | || || || | |
Sbjct 793 ACCAGCATTATCAAATTCAC-CGCAATAATTTGGTGCTGAAAACAGTGTCACCAACTGCC 735
Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCA 167366
| | ||| |||||||||||||||||||| |||| ||| || | | | ||||| |
Sbjct 734 GTCTTGCAAAGAATTCATAACCATCTTCAACGACTTGATGAGCTCTGCAAATCAAGTCGA 675
Query 167367 ACTCCTATTTTT 167378
|||| | |||||
Sbjct 674 ACTCTTGTTTTT 663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1183299581543401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |