Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq80618 123 6e-23 seq229830 111 4e-19 seq160753 109 1e-18 >seq80618 Length=357 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || || |||||||| ||| ||| ||| Sbjct 127 CAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTCCGAC 186 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| ||||||||||| || || ||| Sbjct 187 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAACAA 246 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||| |||||||||||| | || ||| |||| |||||| || Sbjct 247 CGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAACATC 306 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| |||||| | || ||| | || || Sbjct 307 CAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTCCG 344 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | |||||| ||||| || || |||| || ||||| | ||| || Sbjct 344 CGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTG 285 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| ||||||||||||||||| | ||||||||| Sbjct 284 CGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGA 240 >seq229830 Length=7395 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || || || ||||| || ||||||||| | ||| || ||| Sbjct 6039 ACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCTGACACAATTGAAAACGTCAAGGCT 6098 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| ||| || || | ||| | || ||||| ||||| || Sbjct 6099 AAGATTCAAGACAAAGAAGGTATTCCTCCAGAT-CACAACGTCTCATCTTTGCCGGTAAA 6157 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | ||||| ||| ||||| |||| || || |||||||||||| Sbjct 6158 CAATTGGAAGATGGTCGCACTTTAAGCGACTACAATATCCAAAAGGAATCTACTCTTCAC 6217 Query 206374 CTTGTTTTGAGACTTCGA 206391 | ||| | | |||||| Sbjct 6218 TTGGTTCTTCGTCTTCGA 6235 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| || || ||||| || ||| || || Sbjct 5562 CAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCCGAT 5621 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| ||||| || || |||||||| || ||| || Sbjct 5622 ACTATTGAAAATGTTAAAGCTAAA-ATTCAGGACAAGGAAGGAATCCCCCCAGACCAGCA 5680 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| || || || |||||||||||| | |||||| |||||||||| | Sbjct 5681 ACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTACAACAT 5740 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || |||||| | || ||| | ||||| Sbjct 5741 TCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCG 5779 >seq160753 Length=592 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || ||||| ||||| | ||||| ||| |||||| Sbjct 588 CAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCTGAC 529 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| || || ||||||||||| || || ||| Sbjct 528 ACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAGCAA 469 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || || || |||||||||||| | || || | ||||| ||| || Sbjct 468 CGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATAACATC 409 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||||||| | ||| | | ||||| Sbjct 408 CAAAAGGAGTCAACTCTTCACTTGGTTCTTCGTCTTCG 371 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| ||||| | ||||| || || ||| Sbjct 360 CAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCAGAC 301 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || ||||| || || || ||| Sbjct 300 ACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAACAA 241 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||||||||||||||| | || ||| | ||||| ||| | Sbjct 240 CGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAACATT 181 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||| | || ||| | || || Sbjct 180 CAAAAGGAGTCAACCCTTCATTTGGTATTGCGTCTCCG 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178322358925761