Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq229830 127 2e-24
seq160753 118 1e-21
seq80618 104 2e-17
>seq229830
Length=7395
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | |||| ||||||||||||||||| ||||||| || || |
Sbjct 5773 CGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCA 5714
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||||| || | |||| | ||| || || ||||| || || ||||| ||
Sbjct 5713 TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTG 5654
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | |||||||| || || || || | || |
Sbjct 5653 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATT 5594
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||||||||| ||| || | ||||||||||||
Sbjct 5593 GTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || |||||||||||||| |||||||| | || || |
Sbjct 153 CGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCA 94
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||||||||| || |||| | | || |||||||||||||||||||| |||||||| ||
Sbjct 93 TCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCCTTG 34
Query 132029 TC 132030
||
Sbjct 33 TC 32
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
|||||| || | | || || ||||| || ||||||||||| | || || ||||||
Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTC 6164
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
| |||||||||| | |||| ||||| || ||||||||||| || |||||||| ||
Sbjct 6163 CAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTTG 6105
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| || || | | ||| | || || | ||||| ||||| | || | || ||
Sbjct 6104 AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTT 6045
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| ||| || | ||| || |||||
Sbjct 6044 TCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|| || || ||||| | | || |||||||||||||| ||||| || || ||
Sbjct 6001 CGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCG 5942
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||||| || | | |||| | ||| |||||||||||||| || ||||||||
Sbjct 5941 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 5882
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | ||| | || || | ||||| ||||| | || |
Sbjct 5881 TCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATG 5822
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| ||||| | |||||| |||||
Sbjct 5821 GTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787
>seq160753
Length=592
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | ||||||| ||||||||||| || || || || || |
Sbjct 149 CGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCA 208
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||| || |||| |||| | ||| |||||||||||||| || ||||| |||
Sbjct 209 TCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTA 268
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| || || | | || | || || | ||||| ||||| | || |
Sbjct 269 TCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATA 328
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| |||||| | ||||||||||||
Sbjct 329 GTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363
>seq80618
Length=357
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | | || || ||||| |||||||||||| || ||| || |
Sbjct 338 CGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 279
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | || || |||| |||| | ||| ||||||||||| || || ||||||||
Sbjct 278 TCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTG 219
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | ||| | || |||| || || ||||| | || |
Sbjct 218 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATG 159
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||||||||| ||| || | ||||||||||||
Sbjct 158 GTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475234740896760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |