Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq229830 127 2e-24 seq160753 118 1e-21 seq80618 104 2e-17 >seq229830 Length=7395 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||| ||||||||||||||||| ||||||| || || | Sbjct 5773 CGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCA 5714 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | |||| | ||| || || ||||| || || ||||| || Sbjct 5713 TCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTG 5654 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||||| || || || || | || | Sbjct 5653 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATT 5594 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||| || | |||||||||||| Sbjct 5593 GTTTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 5559 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || |||||||||||||| |||||||| | || || | Sbjct 153 CGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTGCGGCCA 94 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || |||| | | || |||||||||||||||||||| |||||||| || Sbjct 93 TCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCCTTG 34 Query 132029 TC 132030 || Sbjct 33 TC 32 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || || ||||| || ||||||||||| | || || |||||| Sbjct 6223 AACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTC 6164 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | |||| ||||| || ||||||||||| || |||||||| || Sbjct 6163 CAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTTG 6105 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | ||| | || || | ||||| ||||| | || | || || Sbjct 6104 AATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTT 6045 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||| || | ||| || ||||| Sbjct 6044 TCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||| | | || |||||||||||||| ||||| || || || Sbjct 6001 CGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCG 5942 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | ||| |||||||||||||| || |||||||| Sbjct 5941 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 5882 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||| ||||| | || | Sbjct 5881 TCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATG 5822 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | |||||| ||||| Sbjct 5821 GTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 >seq160753 Length=592 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||||| ||||||||||| || || || || || | Sbjct 149 CGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCA 208 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| || |||| |||| | ||| |||||||||||||| || ||||| ||| Sbjct 209 TCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTA 268 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | || || | ||||| ||||| | || | Sbjct 269 TCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATA 328 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | |||||||||||| Sbjct 329 GTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 >seq80618 Length=357 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || || ||||| |||||||||||| || ||| || | Sbjct 338 CGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 279 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| |||| | ||| ||||||||||| || || |||||||| Sbjct 278 TCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTG 219 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || |||| || || ||||| | || | Sbjct 218 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATG 159 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| ||| || | |||||||||||| Sbjct 158 GTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475234740896760