Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq15607 98.7 3e-17 seq213115 80.6 8e-12 seq55860 78.8 3e-11 >seq15607 Length=16487 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 9659 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 9600 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9599 CCGGGTTTCGGC 9588 >seq213115 Length=1235 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||| ||||||| ||||||||||||||||||| |||| | ||||| | Sbjct 845 GCCGAAATAGCTCAGTTTGGAGAGCGTTAGACTGAAGATCTAAAGATCCCCGATTCAATC 786 Query 2829 CCGG 2832 |||| Sbjct 785 CCGG 782 >seq55860 Length=14955 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2785 TGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||| |||||||||||||||||||||||| ||||||| |||||| ||| || Sbjct 14955 TGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATCCCGGGTTTCGGC 14900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15809547887445