Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq80618 138 1e-27 seq229830 134 1e-26 seq160753 102 8e-17 >seq80618 Length=357 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | ||| || || ||||||||||| |||||||||||| Sbjct 350 CCACCACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 291 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | || || || || || |||||||| || ||||| || || Sbjct 290 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 231 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || ||||| || | |||||||| | ||| || Sbjct 230 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 171 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || | |||||||| ||||| || ||||| || |||||||| |||||| || || Sbjct 170 TCCAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATTCTGGTT 117 >seq229830 Length=7395 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||||||| || || || | || || || ||||| ||||||||||| ||||| | | Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | ||| || | |||||||| ||||| |||||||| || ||||| || || Sbjct 5953 AATG-TGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 5895 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || || || || | |||||| || | || || Sbjct 5894 AATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAAC 5835 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || |||||||| || || || ||||| |||||||||||||| Sbjct 5834 TTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| || | ||| || || ||||| |||||||||||||| |||| Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | |||||||| || || |||||||| ||||| || || || Sbjct 5725 AAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 5666 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || |||||||| ||| || || | || ||||| | ||| || Sbjct 5665 ATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 5606 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 5605 TCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATTG 5555 Score = 113 bits (124), Expect = 5e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || || | || | ||| || || ||||||||||| || |||||||||| Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||||| || ||||| || | ||| || ||||| || || Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || ||||| || | |||||| || | || || Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACT 6062 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 6061 TCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 105 bits (116), Expect = 7e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || ||||| || | ||| || || ||||| ||||||||||| ||||||| Sbjct 166 TCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCT 107 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || |||||||| || || |||||||| | |||||| ||||| || || Sbjct 106 AAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGG 47 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 |||||||| || || || || || |||||| Sbjct 46 AATGCCTTCCTTGTCCTGGATCTTGGCTTTGAC 14 >seq160753 Length=592 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| ||||| || | || || || || |||||||||||||| || || | | Sbjct 137 CCACCACGGAGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGAC 196 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || | ||| || || || || |||||||| || ||||| || || Sbjct 197 AA-TGTGCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGG 255 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| || || || || | ||||| || | || || Sbjct 256 GATACCTTCCTTATCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAAC 315 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || |||||||| |||||||| ||||| Sbjct 316 TTCAAGGGTGATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503938803103320