Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq54449 448 7e-121 seq55846 102 1e-16 >seq54449 Length=2482 Score = 448 bits (496), Expect = 7e-121 Identities = 655/918 (71%), Gaps = 10/918 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||||||||||||||| ||||||||| || ||||||||||| | |||| |||||||| Sbjct 299 GCGGGTTTTGTACGTAAATAGTACATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAA 358 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| |||| ||| ||| |||| || |||| ||||||||| | || |||||| Sbjct 359 TGCATTGAAGTTAATTTTCCATAGTTTGGTTCTGCTACATGAATATTGAATGACTGACTT 418 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGA-ATTTC 68573 ||||| || ||||| |||||||| || ||||||| || || ||| ||| ||||| Sbjct 419 TGATCAATAAAAGCACCTCTATCAGCAGCCATTTGAATTGTAGA-TTTAATGGATATTTC 477 Query 68574 CCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCT--CGTATT-TTGAATGGA 68630 ||||| ||| ||| ||| | | |||||| |||||| || || || ||| || || Sbjct 478 CCAAACAGTTTTATAAAGTTCTCTGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGA 537 Query 68631 TCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 |||| | || |||||| || || || ||||| | ||| || | ||| ||||| Sbjct 538 ACCACGTTTTGAAATAATTTCGTTTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAA 597 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | | || | ||| | || || | ||| || || |||||||| |||| ||| | || Sbjct 598 GTCCTTGAGCAAATGGTGGTTTACAACTTGGAACTCACCAGATAATACTCGACGGTTATA 657 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 |||||| ||||||||||| | |||||||| ||||||| ||||||||||||||| || Sbjct 658 AATATTTGAAGTATATGGTTCGAATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 717 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTT 68870 ||||||||| ||||| | |||||| |||||| | ||||| | |||||||| || Sbjct 718 AGTTGGCATTGGTGCAATCAATAATGAATTTCTTACTCCATGAACCTTTATTTTATCCTT 777 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 |||| || ||||||||| | ||||| ||| | ||| | ||| ||||||| || Sbjct 778 TAGAGCTTGCCAATCCCACAAATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGAT 837 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 ||| || || | ||| | |||||||||||||| || || | |||||| ||||| Sbjct 838 TCCTTTGCTAACTGGGCTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTC 897 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 69050 ||||||||| || | || || ||||||||||| || || || | || ||| || || Sbjct 898 ACAACTTGCTTCAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTG 957 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 || | | ||| ||| | |||||| | | |||||| || ||||| | || || || || Sbjct 958 AGCCTTTTCACTTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTAC 1017 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAAT 69169 || || |||||||| || || | ||||| |||||| |||||| || | ||||||| Sbjct 1018 ACCGATCCCGATAGGCCTGTGACGTAAATTTG-ACTTTCTAGCTTCAGGCAATGGATAAT 1076 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 |||||| |||||| ||||| || | ||||| | || | ||| || || || | || Sbjct 1077 AATTAACATCTATTATTTTGTTTAAATTTCTGGTTATAATTTTTGTAACTTCTTTCAATT 1136 Query 69230 TGAGAAAATCAAAT---CGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGAT 69286 | | |||||| || || || | | | | || ||| ||||||| || |||| || Sbjct 1137 TTGGGAAATCATATTTACGATCAGCAGTTATATACTGATTAAGTGCTATGGAAGCTAAAT 1196 Query 69287 TACAAACTGCTACCTCAT 69304 ||||||| || | |||| Sbjct 1197 TACAAACGGCGATTTCAT 1214 Score = 403 bits (446), Expect = 2e-107 Identities = 677/969 (70%), Gaps = 13/969 (1%) Strand=Plus/Plus Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 ||| ||||||| || |||| ||||||||| || | |||| | | | ||| | || Sbjct 1278 ATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTAC 1337 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 || || || || ||||||||||| || || || || | |||||| |||||||||||| | Sbjct 1338 GATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCT 1397 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| || || || ||||| | ||| | ||||| |||||||| | || || || ||||| Sbjct 1398 GTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAAT 1457 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG-TAACGCTTC--TCTTTTTCATA 69500 | | ||| | ||| |||||| || || | | ||| || |||||||| Sbjct 1458 TGCATACCAGAGTTGTTGAGCTTTTATT---TTCCTGTTTGCTTTTCCTTCATTTTCATA 1514 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | |||| || || ||||| || ||||||||||| | |||||| ||||||| | Sbjct 1515 CTTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTG 1574 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 |||||||| | ||||| | || ||| ||| ||| ||||||||||| | ||| ||||| Sbjct 1575 AGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAAT 1634 Query 69621 CCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||| | ||| || ||| |||||||| | || || ||||| |||||||| ||||| || | Sbjct 1635 CCATAAAGCGTAGAAA-AGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCA 1693 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 ||| | ||| || | |||||| |||||||| ||||| | ||| || || | |||| | Sbjct 1694 AATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAG 1753 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 | | || || ||||| ||||||| |||| |||| ||||| ||||||| | ||| | Sbjct 1754 GCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGG 1813 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATAT 69859 ||| | |||||| || | ||||| ||||||| |||| | ||| | || |||||| Sbjct 1814 GAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATAC 1873 Query 69860 TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATG 69919 | | || || ||||| ||||| || || || | |||||| | ||||| | Sbjct 1874 AGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACG 1932 Query 69920 TGTCAT--ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACAT 69977 | | | | || || |||||| ||| ||| | ||||||||||| ||||| Sbjct 1933 -GACTTGAAGATCCCTTCTATGGAATCTGAGCACATTGTTAGAAGAAAACATGAAGACAA 1991 Query 69978 TTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTC 70037 |||| | | || | ||| |||||| || ||||| |||||| | || | |||| Sbjct 1992 TTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTC 2051 Query 70038 AGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGC 70097 ||| | ||||| ||||| |||||||||| ||||| || ||||||||||| || Sbjct 2052 AGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGC 2111 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157 ||| | ||| | ||| || ||||||| ||| | |||| |||||| ||||| || || Sbjct 2112 GACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATA 2171 Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| |||| |||||||| ||||| || |||||| ||| |||| || ||||| || Sbjct 2172 TGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGAT 2230 Query 70218 AACAGAATT 70226 | ||||| Sbjct 2231 AGATGAATT 2239 >seq55846 Length=11783 Score = 102 bits (112), Expect = 1e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 34699 AATTCCTAATTCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATA 34758 || ||||| ||| || || ||||||||||| | |||||||||||| |||||||| | || Sbjct 10808 AACTCCTAGTTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTA 10867 Query 34759 AATGTGTGCATTATCCGATATCCAAAATTTTGTATGAAGAACACCGCCT 34807 || |||| |||||| | |||||||| || || |||||||| |||||| Sbjct 10868 AAAGTGTTGATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684924998799240