Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7579 176 4e-39 seq38155 147 2e-30 >seq7579 Length=34747 Score = 176 bits (194), Expect = 4e-39 Identities = 457/686 (67%), Gaps = 13/686 (2%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAGTTTCCGTTGCTAACTACa 40709 || || ||||| ||||||| || | ||| | ||| |||||||||| || |||||||| Sbjct 13814 TCTATCTTTGGTTGTCAAATGAGGTTTAATCTCAGAGATCAGTTTCCATTATTAACTACA 13873 Query 40710 aaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACT 40769 |||| | || |||| ||| ||||||||||||| | ||||| ||||||||| ||| Sbjct 13874 AAAAGGGTATTCTGGAGAGGTGTTGCAGAAGAACTTCTTTGGTTCATCAAAGGTCAAACT 13933 Query 40770 AATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACA 40829 ||||| || | ||| ||||| | ||| | || ||| ||| |||| | | | Sbjct 13934 AATGCCAAAATTTTACAAGAAAAAAACGTGAAAATATGGGATGGAAACAGCACCAGGGAA 13993 Query 40830 TATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGA 40889 | ||| || || || |||||||| ||||| ||| | || || || |||||| Sbjct 13994 TTCTTGGATAAATGTGGTTTTACTGATAGGGAAGAAGGGGATTTGGGGCCAGTCTATGGA 14053 Query 40890 TTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATAA 40948 || || | ||| |||||||| ||| ||||| | ||| ||| | || ||| | || | Sbjct 14054 TTCCAATGGCGTCATTTTGGGGCAGAATATAAAACT-TGTCATGACGACTATTCAAACCA 14112 Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGAC- 41007 |||| | |||||||| | || || | | || || |||| || | ||| Sbjct 14113 AGGAGTTGATCAATTGAATGATGTCATTCAAAGAATCAAGAATAATCC---TA-CGGACA 14168 Query 41008 GTATAATAT---TGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 | | || | ||| || ||||||||| ||| | | |||||||| ||||||| Sbjct 14169 GAAGGATCTGTATGTCAGCTTGGAACCCAGTGGATCTTCCAAAAATGGCATTACCACCTT 14228 Query 41065 GTCATTTGTTATG-TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||| ||||| || ||| ||||| ||| ||| ||| | |||||| |||| ||| Sbjct 14229 GTCA-TTGTTTTGCTCAATTTTATGTTCAAGATGATGAGTTATCATGTTTGATGTACCAA 14287 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 || || | ||| | || || || || || || || || || ||||| ||| | | || Sbjct 14288 AGGTCTGCTGATGTTGGGCTCGGAGT-CCTTTCAATATTGCAAGTTACGCTTTATTGACT 14346 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 ||||||||||| || | | | ||| ||| || |||||||||| || || || Sbjct 14347 TATATGATTGCTCATCTCTGTGGTCTCAAAGTTGGAGACTTTGTTCACAGTTTTGGGGAC 14406 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 ||| | || | ||||| | || || || | |||||| || | | || || ||| Sbjct 14407 ACTCATGTCTATAAGAATCATGTTGATCCTTTGAAAGAACAGCTTAAAAGAGTTCCAAGA 14466 Query 41304 CCATTTCCAACGCTACTTATTAAACG 41329 || || |||| ||| | ||||| || Sbjct 14467 CCTTTCCCAAAGCTGATCATTAACCG 14492 >seq38155 Length=21922 Score = 147 bits (162), Expect = 2e-30 Identities = 226/321 (70%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 |||||| |||||||| |||||||||||| | ||| | ||| | |||||||| | || | Sbjct 13328 TGGAGTTCATGACACAGTTGTCAATCAATTGCTGGCCAAAATTGACGGTGTGGAACAGTT 13387 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 ||| || ||| |||| ||||| ||||| ||| | | || | || || || ||| | Sbjct 13388 GAACAACATTCTAGTCATTGGAATGACCAATCGTCGTGATATGATTGATGAAGCTTTACT 13447 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||| ||||| |||||| || | || ||||||| ||||| |||| | ||| ||||| Sbjct 13448 TCGACCTGGTCGCTTGGAAGTACAAATGGAAATTAGTTTACCGAATGAGTCTGGTCGTGT 13507 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGA 19847 ||||||| || || |||||| | ||| || | ||||| || ||| Sbjct 13508 ACAAATTTTGAATATTCATACAAAACGTATGAGAGAGTTTAATAAGATT---GCCCCCGA 13564 Query 19848 TGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGG 19907 ||||||| | |||||||| | || || || | ||||| || |||||||| || Sbjct 13565 TGTAGATAATAAGGAAATTGCTTCTATGACTAAGAATTTCAGCGGTGCTGAACTTGAAGG 13624 Query 19908 ATTAGTGAGGGCCGCCCAATC 19928 ||||| ||||| |||||||| Sbjct 13625 TTTAGTCAGGGCAGCCCAATC 13645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396336838551205