Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7579 176 4e-39
seq38155 147 2e-30
>seq7579
Length=34747
Score = 176 bits (194), Expect = 4e-39
Identities = 457/686 (67%), Gaps = 13/686 (2%)
Strand=Plus/Plus
Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAGTTTCCGTTGCTAACTACa 40709
|| || ||||| ||||||| || | ||| | ||| |||||||||| || ||||||||
Sbjct 13814 TCTATCTTTGGTTGTCAAATGAGGTTTAATCTCAGAGATCAGTTTCCATTATTAACTACA 13873
Query 40710 aaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACT 40769
|||| | || |||| ||| ||||||||||||| | ||||| ||||||||| |||
Sbjct 13874 AAAAGGGTATTCTGGAGAGGTGTTGCAGAAGAACTTCTTTGGTTCATCAAAGGTCAAACT 13933
Query 40770 AATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACA 40829
||||| || | ||| ||||| | ||| | || ||| ||| |||| | | |
Sbjct 13934 AATGCCAAAATTTTACAAGAAAAAAACGTGAAAATATGGGATGGAAACAGCACCAGGGAA 13993
Query 40830 TATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGA 40889
| ||| || || || |||||||| ||||| ||| | || || || ||||||
Sbjct 13994 TTCTTGGATAAATGTGGTTTTACTGATAGGGAAGAAGGGGATTTGGGGCCAGTCTATGGA 14053
Query 40890 TTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATAA 40948
|| || | ||| |||||||| ||| ||||| | ||| ||| | || ||| | || |
Sbjct 14054 TTCCAATGGCGTCATTTTGGGGCAGAATATAAAACT-TGTCATGACGACTATTCAAACCA 14112
Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGAC- 41007
|||| | |||||||| | || || | | || || |||| || | |||
Sbjct 14113 AGGAGTTGATCAATTGAATGATGTCATTCAAAGAATCAAGAATAATCC---TA-CGGACA 14168
Query 41008 GTATAATAT---TGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064
| | || | ||| || ||||||||| ||| | | |||||||| |||||||
Sbjct 14169 GAAGGATCTGTATGTCAGCTTGGAACCCAGTGGATCTTCCAAAAATGGCATTACCACCTT 14228
Query 41065 GTCATTTGTTATG-TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123
|||| ||||| || ||| ||||| ||| ||| ||| | |||||| |||| |||
Sbjct 14229 GTCA-TTGTTTTGCTCAATTTTATGTTCAAGATGATGAGTTATCATGTTTGATGTACCAA 14287
Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183
|| || | ||| | || || || || || || || || || ||||| ||| | | ||
Sbjct 14288 AGGTCTGCTGATGTTGGGCTCGGAGT-CCTTTCAATATTGCAAGTTACGCTTTATTGACT 14346
Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243
||||||||||| || | | | ||| ||| || |||||||||| || || ||
Sbjct 14347 TATATGATTGCTCATCTCTGTGGTCTCAAAGTTGGAGACTTTGTTCACAGTTTTGGGGAC 14406
Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303
||| | || | ||||| | || || || | |||||| || | | || || |||
Sbjct 14407 ACTCATGTCTATAAGAATCATGTTGATCCTTTGAAAGAACAGCTTAAAAGAGTTCCAAGA 14466
Query 41304 CCATTTCCAACGCTACTTATTAAACG 41329
|| || |||| ||| | ||||| ||
Sbjct 14467 CCTTTCCCAAAGCTGATCATTAACCG 14492
>seq38155
Length=21922
Score = 147 bits (162), Expect = 2e-30
Identities = 226/321 (70%), Gaps = 6/321 (2%)
Strand=Plus/Plus
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
|||||| |||||||| |||||||||||| | ||| | ||| | |||||||| | || |
Sbjct 13328 TGGAGTTCATGACACAGTTGTCAATCAATTGCTGGCCAAAATTGACGGTGTGGAACAGTT 13387
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
||| || ||| |||| ||||| ||||| ||| | | || | || || || ||| |
Sbjct 13388 GAACAACATTCTAGTCATTGGAATGACCAATCGTCGTGATATGATTGATGAAGCTTTACT 13447
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
||||| ||||| |||||| || | || ||||||| ||||| |||| | ||| |||||
Sbjct 13448 TCGACCTGGTCGCTTGGAAGTACAAATGGAAATTAGTTTACCGAATGAGTCTGGTCGTGT 13507
Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGA 19847
||||||| || || |||||| | ||| || | ||||| || |||
Sbjct 13508 ACAAATTTTGAATATTCATACAAAACGTATGAGAGAGTTTAATAAGATT---GCCCCCGA 13564
Query 19848 TGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGG 19907
||||||| | |||||||| | || || || | ||||| || |||||||| ||
Sbjct 13565 TGTAGATAATAAGGAAATTGCTTCTATGACTAAGAATTTCAGCGGTGCTGAACTTGAAGG 13624
Query 19908 ATTAGTGAGGGCCGCCCAATC 19928
||||| ||||| ||||||||
Sbjct 13625 TTTAGTCAGGGCAGCCCAATC 13645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396336838551205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |