Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq54449 181 9e-41 seq229830 120 3e-22 seq160753 109 5e-19 >seq54449 Length=2482 Score = 181 bits (200), Expect = 9e-41 Identities = 398/589 (68%), Gaps = 33/589 (6%) Strand=Plus/Plus Query 131307 TTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGC 131366 ||| | ||||||| | ||| || || | ||||||||| || |||| || | | Sbjct 1268 TTATATATTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAG 1327 Query 131367 AATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGAT 131426 |||||| || ||||| | ||| | |||||| | ||| || || || | ||||||||||| Sbjct 1328 AATACTCTACGATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGAT 1387 Query 131427 TGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAG 131486 | || || || | || ||||||| ||| || || || || ||||| ||||| | Sbjct 1388 TACTCTTTCTGTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTG 1447 Query 131487 TTTCAATAAT-GTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGT 131545 |||||||| | || | ||||| | |||| || || || | || || | Sbjct 1448 ACTCAATAATTGCATACCA-GAGTTGTTGAGCT-----TTTATTTTCCTGTTTGC----T 1497 Query 131546 TTTTCGTAATTTTCGTAC-------AACGTTTC--AAAGTTTTGGCC--AAACGAACTGT 131594 ||| | | |||||| ||| | ||||| ||| | || || |||| | || Sbjct 1498 TTTCCTTCATTTTCATACTTAATATAGAGTTTCTCAAATTCTTCACCCCAAAC--ATCGT 1555 Query 131595 CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCT 131654 ||| |||||||| | |||||||| || ||||| | ||| ||||| || | Sbjct 1556 GCAATCCGGGACATTTGTGAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTT 1615 Query 131655 TCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTG 131714 ||||||||||||| || | |||||| ||||| || |||||||||||| ||||||||| Sbjct 1616 TCATAAACAAATCTGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTT 1675 Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 | || | |||| ||||||| ||||| || ||||| || | |||||| |||||||||| Sbjct 1676 TTCCTGTGTTTTTCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAAT 1735 Query 131775 ACACTGCCATTGC-----GCCT-TTGCGCTTACCGCCTTGATTAACATGACGAACCATGT 131828 | | ||| | ||| |||| ||| || || ||||||| |||| || | | | Sbjct 1736 AAATTGCGAATGCTCCAGGCCTCTTG---TTGCCTCCTTGATCTACATATCGGGCAACAT 1792 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877 | ||| | || | |||||||| | ||||| || | ||||||| || Sbjct 1793 TATTGAAGACTCTTAACATGGGAACTAAACCATTTGAAGTTCCATTAGT 1841 >seq229830 Length=7395 Score = 120 bits (132), Expect = 3e-22 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | ||||| || ||||| |||||||||||||| Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||||||||||| | |||||||| || ||||| || || Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||| ||||| || ||||| || | | |||| | ||||| | |||| ||||| Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGC-TCAAC 6063 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||| || |||| || || |||| ||| || || |||||||||||| || || Sbjct 6062 TTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATACCTCCT 6008 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | ||||| ||||| || | ||||| ||||||||||| || |||||||| Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||||||||| || ||||| ||||||||||||||||||| || || Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTC 27178 | || || || || ||||||| ||| | | |||| Sbjct 45 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTC 8 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || ||||| ||||| | ||||| ||||||||||| || ||||| || |||| || Sbjct 6001 CGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCG 5942 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | || | ||| |||||||| || || | ||| ||||| Sbjct 5941 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 5882 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | |||| | ||||| | | |||||||| | || || Sbjct 5881 TCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATG 5822 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | ||| || |||| ||||| || || ||||||||| || Sbjct 5821 GTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATACCT 5783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||||||||| || | || || ||||||||||| ||||| |||||| Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||||| || ||| | || | ||| || || || || || Sbjct 5725 AAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 5666 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || || ||| | |||| | ||| || | | |||||| Sbjct 5665 ATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 5606 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||| || |||| ||| || || || || |||||| Sbjct 5605 TCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATA 5558 >seq160753 Length=592 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||||||||||||| | || || || |||||||| || || || || |||| | Sbjct 149 CGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCA 208 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || |||||| | || | ||| |||||||| || || | ||| || ||| Sbjct 209 TCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTA 268 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || ||||| || | | | || | ||||||| |||| |||||||| || || || Sbjct 269 TCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGC-TCAACTTCAAGGGTGAT 327 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||| || |||| |||||| || || || |||||| Sbjct 328 AGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423737864537592