Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 181 9e-41
seq229830 120 3e-22
seq160753 109 5e-19
>seq54449
Length=2482
Score = 181 bits (200), Expect = 9e-41
Identities = 398/589 (68%), Gaps = 33/589 (6%)
Strand=Plus/Plus
Query 131307 TTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGC 131366
||| | ||||||| | ||| || || | ||||||||| || |||| || | |
Sbjct 1268 TTATATATTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAG 1327
Query 131367 AATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGAT 131426
|||||| || ||||| | ||| | |||||| | ||| || || || | |||||||||||
Sbjct 1328 AATACTCTACGATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGAT 1387
Query 131427 TGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAG 131486
| || || || | || ||||||| ||| || || || || ||||| ||||| |
Sbjct 1388 TACTCTTTCTGTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTG 1447
Query 131487 TTTCAATAAT-GTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGT 131545
|||||||| | || | ||||| | |||| || || || | || || |
Sbjct 1448 ACTCAATAATTGCATACCA-GAGTTGTTGAGCT-----TTTATTTTCCTGTTTGC----T 1497
Query 131546 TTTTCGTAATTTTCGTAC-------AACGTTTC--AAAGTTTTGGCC--AAACGAACTGT 131594
||| | | |||||| ||| | ||||| ||| | || || |||| | ||
Sbjct 1498 TTTCCTTCATTTTCATACTTAATATAGAGTTTCTCAAATTCTTCACCCCAAAC--ATCGT 1555
Query 131595 CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCT 131654
||| |||||||| | |||||||| || ||||| | ||| ||||| || |
Sbjct 1556 GCAATCCGGGACATTTGTGAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTT 1615
Query 131655 TCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTG 131714
||||||||||||| || | |||||| ||||| || |||||||||||| |||||||||
Sbjct 1616 TCATAAACAAATCTGGAATCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTT 1675
Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774
| || | |||| ||||||| ||||| || ||||| || | |||||| ||||||||||
Sbjct 1676 TTCCTGTGTTTTTCTTCAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAAT 1735
Query 131775 ACACTGCCATTGC-----GCCT-TTGCGCTTACCGCCTTGATTAACATGACGAACCATGT 131828
| | ||| | ||| |||| ||| || || ||||||| |||| || | | |
Sbjct 1736 AAATTGCGAATGCTCCAGGCCTCTTG---TTGCCTCCTTGATCTACATATCGGGCAACAT 1792
Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877
| ||| | || | |||||||| | ||||| || | ||||||| ||
Sbjct 1793 TATTGAAGACTCTTAACATGGGAACTAAACCATTTGAAGTTCCATTAGT 1841
>seq229830
Length=7395
Score = 120 bits (132), Expect = 3e-22
Identities = 170/235 (72%), Gaps = 3/235 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | || | ||||| || | ||||| || ||||| ||||||||||||||
Sbjct 6240 CCTCCTCGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTT 6181
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | ||||| | ||||||||||| | |||||||| || ||||| || ||
Sbjct 6180 AAAGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGA 6122
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||| ||||| || ||||| || | | |||| | ||||| | |||| |||||
Sbjct 6121 ATACCTTCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGC-TCAAC 6063
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254
||||| || |||| || || |||| ||| || || |||||||||||| || ||
Sbjct 6062 TTCTAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATACCTCCT 6008
Score = 114 bits (126), Expect = 1e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | ||||| ||||| || | ||||| ||||||||||| || ||||||||
Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | ||||||||||| || ||||| ||||||||||||||||||| || ||
Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTC 27178
| || || || || ||||||| ||| | | ||||
Sbjct 45 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTC 8
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|| ||||| ||||| | ||||| ||||||||||| || ||||| || |||| ||
Sbjct 6001 CGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCG 5942
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | ||||| || || | || | ||| |||||||| || || | ||| |||||
Sbjct 5941 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 5882
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | |||| | ||||| | | |||||||| | || ||
Sbjct 5881 TCTTGGATCTTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATG 5822
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251
| ||| || |||| ||||| || || ||||||||| ||
Sbjct 5821 GTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCATACCT 5783
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | ||||||||||| || | || || ||||||||||| ||||| ||||||
Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | ||||| | ||||| || ||| | || | ||| || || || || ||
Sbjct 5725 AAAGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 5666
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || || || ||| | |||| | ||| || | | ||||||
Sbjct 5665 ATTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 5606
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || || | ||| || |||| ||| || || || || ||||||
Sbjct 5605 TCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATA 5558
>seq160753
Length=592
Score = 109 bits (120), Expect = 5e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||||||||||||| | || || || |||||||| || || || || |||| |
Sbjct 149 CGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCA 208
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | ||| || |||||| | || | ||| |||||||| || || | ||| || |||
Sbjct 209 TCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTA 268
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211
|| ||||| || | | | || | ||||||| |||| |||||||| || || ||
Sbjct 269 TCTTGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGC-TCAACTTCAAGGGTGAT 327
Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||| || |||| |||||| || || || ||||||
Sbjct 328 AGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATA 364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423737864537592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |