Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_027990.1 Length=48211 Score E Sequences producing significant alignments: (Bits) Value seq183023 572 5e-159 seq214470 448 1e-121 seq40142 143 8e-30 >seq183023 Length=707 Score = 572 bits (634), Expect = 5e-159 Identities = 370/415 (89%), Gaps = 1/415 (0%) Strand=Plus/Plus Query 19654 GCGACAGATTCAAGAATTGTGCGGCGGTTATATGCCGAAGAAGTCGTTAAACGGACAATC 19713 |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||| Sbjct 2 GCGACAGAGTCAAGAATTGTACGGCGGCTATATGCCGAAGAAGTCGTCAAACGGACAATC 61 Query 19714 CAAGCAATTAAACACTGTGATAAAGATTGCCAGAATATCCTAGATGAACTATATCTACAA 19773 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 62 CAAGCAATTAAACACTGTGATAAAGATTGCCAGAATATCTTAGATGAACTATATCTACAA 121 Query 19774 GAACTATCAGATACCATGTGCTTTATGGACTTAGGATTTTCTGAGTCCAGCTATTTCCAC 19833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GAACTATCAGATACCATGTGCTTTATGGACTTAGGATTTTCTGAGTCCAGCTATTTCCAC 181 Query 19834 GTTTGGAAGCCAAAAGCACTATTACAGTTTGCCGATTGCTACATGCTGGATGATCTCCAT 19893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GTTTGGAAGCCAAAAGCACTATTACAGTTTGCCGATTGCTACATGCTGGATGATCTCCAT 241 Query 19894 ATTTTTaaaaaaaGCAGTTTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA 19953 |||||||||||||||||||||||| || Sbjct 242 ATTTTTAAAAAAAGCAGTTTTGATGCAGTTTGAGTGCAGTTTTTGTGCAGTCGGACAGCA 301 Query 19954 GGCACTACCCAATTTTTGGGTGTAAATTGGTAACATAAGCGAATGATGAAATGGACGTGC 20013 ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 302 GGCACCATCCAATTTTTGGGTGTAAATTGGTAACATAAGCGATTGATGAAATGGACGTGC 361 Query 20014 ATAGCTCAACGGCAGAGCAAAGAAGATACGGGTTCGACTCCCGCTGCACGTATTG 20068 |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| Sbjct 362 ATAGCTCAACGGAAGAGC-AAGAAGATACGGGTTCGACTCCCGTTGCACGTATTG 415 >seq214470 Length=1311 Score = 448 bits (496), Expect = 1e-121 Identities = 348/412 (84%), Gaps = 2/412 (0%) Strand=Plus/Plus Query 16291 AAGGAGTAAAAGT-TATGTCACTAAACAAGAAAATGGCAGCCGCAATCAGGGCTGCTTAC 16349 |||||||| | || ||||||| ||||||||||||||| || | ||| || || |||||| Sbjct 415 AAGGAGTAGAGGTGTATGTCATCAAACAAGAAAATGGCGGCTGAAATTAGAGCGGCTTAC 474 Query 16350 GCCAATTATGGCGATGATCCAGATAAGTGGCCGAAAGATGTTAAAA-AGAGATCCGCGGT 16408 |||||||||||||| ||||||||| | |||||| |||||||||||| ||||||||||||| Sbjct 475 GCCAATTATGGCGACGATCCAGATGATTGGCCGGAAGATGTTAAAAAAGAGATCCGCGGT 534 Query 16409 CAAACTGAGGAAGGACACACGGCAGAAAATAAGATCCTACGCCACATGATTATCCACGGA 16468 ||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| | |||||| Sbjct 535 CAAACTGAGGAAGAACACACGGCTGAAAATAAGATTCTACGCCACCTGATTTTACACGGA 594 Query 16469 TACACCAACCAATATATTGCACAAGAACGGTCAAAGTCATCGCATTATCTAAAGCAATTA 16528 |||||||| |||||||||||||||||||||| ||| || | || ||| || |||||||| Sbjct 595 TACACCAATAAATATATTGCACAAGAACGGTCGAAGACACCTCAATATATACAGCAATTA 654 Query 16529 CGTGGGAAAATGAAAAATCGTGACGAATTGAATTACCAAGCCACACCAGATGAATTAGCA 16588 ||||| | |||| ||| ||||||||||| ||||||||||||||||||||||||| || Sbjct 655 CGTGGCAGAATGCAAAGACGTGACGAATTAGATTACCAAGCCACACCAGATGAATTGACA 714 Query 16589 CAGCTAAAATACAATCTCGATCACATGGATTGGCCTAACAATAAAGGAATTGCTAGTGCT 16648 ||| | |||||||| || | |||||| | ||||||||| |||||| | ||| ||| | Sbjct 715 CAGTTGAAATACAACGTCAAACACATGAACAAGCCTAACAACAAAGGAGTGGCTCGTGTT 774 Query 16649 ATGGGACGCGACAAAGATTGGGTACGCTGCATGCGAGTGAAGCTACGGGAGG 16700 ||| || || || |||||||| ||||| ||||||| |||||||||||||| Sbjct 775 ATGCACCGTGATAAGGATTGGGTGCGCTGTATGCGAGAGAAGCTACGGGAGG 826 Score = 232 bits (256), Expect = 2e-56 Identities = 163/186 (88%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 18333 GGATGCAGCCAATGAAACACGGTGACAAGGTGTATTACCACCGCCACCATCGCGTTAAGC 18392 ||| ||||||||||| |||||| || ||||||||||||||||| | ||| | |||||||| Sbjct 822 GGAGGCAGCCAATGAGACACGGCGATAAGGTGTATTACCACCGACGCCACCACGTTAAGC 881 Query 18393 AATCAGCCACATGGCTATGCTGGATCACTCGTGGTGATAGGCGAACAGTGATGATGAAAG 18452 | | || |||||||||||||||||||||||||||||||| ||| | | |||||||||| Sbjct 882 AGCCTGCTACATGGCTATGCTGGATCACTCGTGGTGATAGCCGATCGGCAATGATGAAAG 941 Query 18453 TTAAAGGCAGCCACAGGAATATTGAGGTGGCACCTAGTGATGTTGAGATCGGGAGGACAA 18512 ||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||| | | Sbjct 942 TTAAAGGCAGCTACAGGCATATTGAGGTGGCACCGAGTGATGTTGAGATTGGGAGGGCGA 1001 Query 18513 ATGATG 18518 |||||| Sbjct 1002 ATGATG 1007 >seq40142 Length=1236 Score = 143 bits (158), Expect = 8e-30 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 19122 GGTGTGGCAATCACTTTACCAAGCTGAACGACAGCCAGCGCAACGCGATTAACAAATTGT 19181 ||||||||||||||||||| || |||| | |||||||||| |||||||||||||| ||| Sbjct 956 GGTGTGGCAATCACTTTACAAATCTGAGCAACAGCCAGCGTAACGCGATTAACAATCTGT 1015 Query 19182 CAGCGAAGGAACGTAACCAGGTTATTCATGAGCTGACAATGG 19223 ||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1016 CAGCGAAGGAACGCAACCAGGTTATTCATGAGCTGACGATGG 1057 Score = 93.3 bits (102), Expect = 1e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19021 CTAGTGGAGGCAGAACATGACACACGAACAGATTGAGTATCGCAATTACGTACTGCAAGG 19080 ||| |||||||| |||||||||||| | |||||||||||||| |||||||| ||||||| Sbjct 736 CTATTGGAGGCACAACATGACACACAATCAGATTGAGTATCGTAATTACGTGATGCAAGG 795 Query 19081 CATGGCAAG 19089 ||||||||| Sbjct 796 CATGGCAAG 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153730662352466