Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq229830 167 3e-36 seq80618 134 2e-26 seq54449 84.2 2e-11 >seq229830 Length=7395 Score = 167 bits (184), Expect = 3e-36 Identities = 174/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||||||||| | || |||||| || | Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | |||||||| ||||| ||||| || || ||||||||||| || Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCA- 6133 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||| ||| | || |||| ||| || || ||||| ||| Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAAT 6193 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| |||||||| | || | |||||||| || || Sbjct 6194 ATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGG 6240 Score = 143 bits (158), Expect = 3e-29 Identities = 137/173 (79%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| ||| | || || || || ||||||||||| || ||||||||||| || ||||| Sbjct 4 CATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACAGCG 63 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATAATGTCC 27589 ||| |||||||| || ||||| ||||| |||| || || | |||| |||||||| | | Sbjct 64 TCTCATTTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTTAGC-GACTATAACATTC 122 Query 27590 AAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 |||| ||||| ||||| || | ||||||||||||||||| ||| | ||||| Sbjct 123 AAAAAGAATCTACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGAGCATTTTAA 175 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || || || || ||||| | |||||||| || Sbjct 5559 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCC 5618 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||||||||||||||| ||||| || ||||||||| Sbjct 5619 GATACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 5678 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | || || ||||| || ||| | || |||| || || | ||| || || || Sbjct 5679 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGC-GATTACAA 5737 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| | || ||||||||||| || || Sbjct 5738 CATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGG 5785 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || || || || | || |||||| | | Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || || ||||| || || ||||||||||| || Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| || ||| | || || | || || | |||||||||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||| ||||| || || ||| |||| || ||||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCT 6004 >seq80618 Length=357 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 27390 CAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCT 27449 |||||| | || | |||||| || || |||||||| | || || ||||| ||||| | Sbjct 110 CAGAAACA--ACCAGAATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTT 167 Query 27450 TGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || ||||| | || | ||||| |||| | ||||| || || || ||||| || || Sbjct 168 GGAAGTTGAACCTTCCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGG 227 Query 27510 AATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 ||| || ||||| || || ||| | || || || || |||||| | || |||| || || Sbjct 228 AATCCCACCAGATCAACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCAC 287 Query 27570 CCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 | | | ||||| || ||||||||||||| || ||||| | || |||||||| || || Sbjct 288 CTTGTCCGACTACAACATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTCCGTGG 347 Query 27630 TGG 27632 ||| Sbjct 348 TGG 350 >seq54449 Length=2482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| || | ||| || ||||| | || || | | | | | |||| |||||||| ||||| Sbjct 1290 GGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCA 1349 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | |||| | ||||||||||||| | |||| || || ||| ||||||||| || Sbjct 1350 GAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATC 1409 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||||| |||| || || || || || || || ||||||| Sbjct 1410 TTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACT 1450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568663336435920