Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq229830 134 9e-27 seq160753 131 1e-25 seq80618 104 1e-17 >seq229830 Length=7395 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| || || |||||||| || || |||||||||||||| ||||| Sbjct 6013 CCTCCTCTGAGACGTAATACTAAATGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGAC 5954 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || ||||||| | |||||| || ||||| || ||||| ||||| || || || Sbjct 5953 AATGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 5894 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || | |||||| | ||||||||| ||| || Sbjct 5893 ATACCTTCTTTGTCTTGGATC-TTGGCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAAC 5835 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || ||||| || ||||| ||||| Sbjct 5834 TTCCAATGTGATGGTTTTTCCAGTCAAGGTTTTGACGAAAATTTGCAT 5787 Score = 107 bits (118), Expect = 1e-18 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | ||||||||| ||||| || || || || ||||||||||| |||| || Sbjct 5785 CCTCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTC 5726 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| | |||||| || || || || ||||| || ||||| || | Sbjct 5725 AAAGTG--CGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGG 5668 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | ||| |||||||| ||| ||| | |||||| | ||| || || || Sbjct 5667 GGATTCCTTCCTTGTC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 5609 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||| ||| || |||||||| || || || || || ||||||||||| ||| Sbjct 5608 ACCTCCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATTG 5555 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| |||||||| || |||||||||||||| || | Sbjct 165 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTA 106 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || | ||||||||| || || || Sbjct 105 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGA 46 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || |||||||| |||||| Sbjct 45 ATGCCTTCCTTGTCCTGGATCTT 23 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 |||||| | ||||| || ||||| ||||||||| |||||||||||||| | ||| || Sbjct 7395 AAGACGGAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGACAATGTGCG 7336 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | |||||| || || || || ||||| ||||| || || || Sbjct 7335 TCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 7285 >seq160753 Length=592 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| || || |||||||||||||||||||||||| | ||| || Sbjct 146 AGACGCAATACCAAATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGT 205 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || ||||| || || ||||| ||||| || || || | || ||| Sbjct 206 CCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCC 265 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | |||||| | ||| |||||| ||| ||||| | ||| Sbjct 266 TTATCT-TGAATCTTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGT 324 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || ||||||||||| Sbjct 325 GATAGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||| |||||||||||||| Sbjct 365 CCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGAT 424 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | |||||| || || || || ||||| || || || || || Sbjct 425 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 484 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || || |||| || | || ||| | ||||||||| || || Sbjct 485 ATTCCTTCTTTATCCTGGATC-TTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAAC 543 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || || ||||| || || |||||||| Sbjct 544 TTCAAGGGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 >seq80618 Length=357 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||||| ||||| || || || | || || Sbjct 341 AGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGT 282 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || ||||| || || ||||| ||||| || || || | ||| || Sbjct 281 CCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCT 222 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || | | ||| ||||| || ||||||| ||| Sbjct 221 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTA 162 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 || || ||||| || || || || || ||||||||||| || |||| Sbjct 161 ATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATTCTGGTTGT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313843380556553