Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq194783 127 2e-24 seq188621 118 9e-22 seq7579 111 1e-19 >seq194783 Length=813 Score = 127 bits (140), Expect = 2e-24 Identities = 446/686 (65%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 118375 AAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAGTGTGGGA 118434 ||||||||||| ||||| || || || || | || | | | ||||| |||| | || Sbjct 20 AAATCTTCAAAATTAAATTCATCAATTTTCTCGACTTTCCTATTTATAACTAGTTTTGGG 79 Query 118435 AACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACA 118494 || || || | ||||| | || | || ||| | ||||||| | || || Sbjct 80 AAAGGTCTTGGAACTCTTGTCAACTGCTCTGCCAATGGAATCACGTGATTCTTGTAAACG 139 Query 118495 TGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGT--AAGCCCTGTCAGGTGAGCAA 118552 |||| ||| ||||| |||| | || |||||| | | || | | || ||||||| Sbjct 140 TGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAATTACAGACA--TGAGCAA 197 Query 118553 TCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTG 118612 |||| | || |||||| |||||||| | ||| || ||||| || | | |||| ||| Sbjct 198 TCATATGAGTTAACAAAGCATAGCTGGCAATATTGAATGGAACTCCTAAAGCCATATCTC 257 Query 118613 CTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGA 118672 | | ||| |||||||| ||||| ||||| || ||| |||||||||||| | Sbjct 258 CAGCTCTTTGGTACAAAGAACAAGAAAGCTCTCCATTTTGAACATAAAACTGTACAAAAC 317 Query 118673 TGTGACATGGAGGCAGAACCA----TGGAACTCAGTTGGGCAGGATTCCAGGCTGTTAAA 118728 | |||||||| || || ||| |||| | | |||||||||| ||||| | Sbjct 318 TATGACATGGTGGGAGGGCCATTTTTGGA----ATGTCCACAGGATTCCAAGCTGTCATG 373 Query 118729 ACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAATTAAATT-CTGAATCTGATC 118787 | ||||||| || ||| | | || | |||| ||| || || ||| || Sbjct 374 CAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATTGCTCAA-CTGGTC 432 Query 118788 CACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCCAAAAAATCTCCA 118847 || || ||||||||||| | | || ||| ||||| ||||| ||| | ||| Sbjct 433 AACGCCTTTTCCAGTATAATCGTCGTGACAAGTTTTGTATTCAGCCCCGAAATGACGCCA 492 Query 118848 TTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGACCTAAAATCTAAACCTACTTTTCT 118907 |||||| ||||| || || |||| ||||| | || | ||| | || ||| | Sbjct 493 TTGAAAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCT-GTCTGTAAGACCACATTTAT 551 Query 118908 CTGA-AATTCTTTTGACCCATTAGCATTCCAAATAGCAA-CTCCtttttttGCCAGATCA 118965 || | || ||| ||| | ||| ||||||| || || | ||| | ||| || | Sbjct 552 CTAAGAAATCTCTTGTGCAATTGTCATTCCAGATCTTAATGTTCTTGTCTTG-AAGTACC 610 Query 118966 TTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAA 119025 ||| || || ||| || | |||||| | || || ||||| || | ||||| || Sbjct 611 TTAACATTAGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACAGCCCTCCAGAAG 670 Query 119026 ACTGTTTTTGTTGTAAACAGTGGAAA 119051 ||| ||||||| || |||| ||||| Sbjct 671 ACTCTTTTTGTGGTCAACAAAGGAAA 696 >seq188621 Length=750 Score = 118 bits (130), Expect = 9e-22 Identities = 380/578 (66%), Gaps = 10/578 (2%) Strand=Plus/Minus Query 118479 GTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGT-AAGCC 118537 ||||||| | || || |||| ||| ||||| |||| | || |||||| | | ||| Sbjct 665 GTGATTCTTGTAAACGTGAGTATCTCCAATGTTATGGACAAAATCACCAACTCTTAAGTT 606 Query 118538 -CTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596 | | || ||||||||||| | || |||||| |||||||| | ||| || ||||| Sbjct 605 ACAGACA--TGAGCAATCATATGAGTTAACAAAACATAGCTGGCAATATTGAATGGAACT 548 Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656 |||| |||||| || | | ||| |||||||| ||||| || || || ||| |||| Sbjct 547 CCCAAACCCATATCACCAGCTCTTTGGTACAAAGAACAAGAAAGTTCTCCATTTTGAACA 488 Query 118657 TAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTC 118716 |||||||| | | |||||||| || || |||| | | | |||||||| Sbjct 487 TAAAACTGTACAAAACTATGACATGGTGGAAGGGCCATTTTAGGGATGTCCACAGGATTC 428 Query 118717 CAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAATTAAAT-T 118775 || ||||| | | ||||||| || ||| | | || | |||| || Sbjct 427 CAAGCTGTCATGCAAATCCTTCTGTCATTTGGATTGGTTTTAATTGTGTGGATTACATGG 368 Query 118776 CTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCC 118835 || || ||| || || || || |||||||| | | | || ||| ||||| ||||| Sbjct 367 CTTAA-CTGGTCAACGCCTTTGCCAGTATAATCATCATGACAAGTTTTGTATTCAGCCCC 309 Query 118836 AAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGACCTAAAATCTAA 118895 |||| | ||||||||| ||||| || || |||| ||||| | || | | ||| Sbjct 308 AAAATGACGCCATTGAAAGCCATATACTGGTCCCAAGTCTCCTTCTTCTCT-ATCTGTAA 250 Query 118896 ACCTACTTTTCTCTGA-AATTCTTTTGACCCATTAGCATTCCAAATAGCAA-CTCCtttt 118953 | || ||| ||| | || ||| ||| | |||| ||||||| || || | ||| | Sbjct 249 GACCACATTTATCTAAGAAATCTCTTGTGCAATTATCATTCCAGATCTTAATGTTCTTGT 190 Query 118954 tttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACG 119013 ||| || | || || || ||| || | |||||| | || || ||||| || Sbjct 189 CTTG-AAGTACCTTCACATTGGTTTGACCTCTCACAAACCACAACAGTTCTTCAACTACA 131 Query 119014 CCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 | ||||| || ||| |||| || || | || ||||| Sbjct 130 GCCCTCCAGAAGACTCTTTTAGTGGTCAGCAAAGGAAA 93 >seq7579 Length=34747 Score = 111 bits (122), Expect = 1e-19 Identities = 485/752 (64%), Gaps = 19/752 (3%) Strand=Plus/Minus Query 118375 AAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAG-TGTGGG 118433 ||||||||||| || ||||| || || || | || | ||| ||| || | |||| Sbjct 14531 AAATCTTCAAATTTGAAGTCCTCGATTTTCTCGACTTTACGGTTAATGATCAGCTTTGGG 14472 Query 118434 AAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGAC 118493 ||| || || | ||| | || || ||||| || |||| |||||| ||||||| Sbjct 14471 AAA-GGTCTTGGAACTCTTTTAAGCTGTTCTTTCAAAGGATCAACATGATTCTTATAGAC 14413 Query 118494 ATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAAT 118553 ||||| ||||||| | || | || || ||| | | || || || |||||||| Sbjct 14412 ATGAGTGTCCCCAAAACTGTGAACAAAGTCTCCAACTTTGAGACCACAGAGATGAGCAAT 14353 Query 118554 CATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGC 118613 ||| || ||||| ||| ||| || || | ||| ||||| || || || || | || || Sbjct 14352 CATATAAGTCAATAAAGCGTAACTTGCAATATTGAAAGG-ACTCCGAGCCCAACATCAGC 14294 Query 118614 TGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGAT 118673 || || ||||||| || || | ||| | | | ||||||||| ||| | Sbjct 14293 AGACCTTTGGTACATCAAACATGATAACTCATCATCTTGAACATAAAATTGAGCAAAACA 14234 Query 118674 GTGACATGGAGGCAGAACCA----TGGAACTCAGTTGGGCAGGATTCCAGGCTGTTA-AA 118728 ||||| || || | ||| |||| || | | || ||||| |||| | | Sbjct 14233 ATGACAAGGTGGTAATGCCATTTTTGGA----AGATCCACTGGGTTCCAAGCTGACATAC 14178 Query 118729 ACATGCCTTCTG-CTATATGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATC 118787 | || ||||||| | || | || | | || || | | ||| | || | | ||||| Sbjct 14177 AGAT-CCTTCTGTCCGTAGGATTATTCTTG-ATTCTTTGAATGACATCATTCAATTGATC 14120 Query 118788 CACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCCAAAAAATCTCCA 118847 || || | | ||| | | || ||||||||||||||||||| | ||| Sbjct 14119 AACTCCTTGGTTTGAATAGTCGTCATGACAAGTTTTATATTCTGCCCCAAAATGACGCCA 14060 Query 118848 TTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGACCTAAAATCTAAACCTACTTTTCT 118907 ||| || ||||| || ||||||| ||| || | |||| | |||| | || ||| | Sbjct 14059 TTGGAATCCATAGACTGGCCCCAAATCCCCTTCTTCCCTATCA-GTAAAACCACATTTAT 14001 Query 118908 CTGA-AATTCTTTTGACCCATTAGCATTCCA-AATAGCAACTCCtttttttGCCAGATCA 118965 | | ||||| | | | || ||| ||| | | || | |||| ||| | || Sbjct 14000 CCAAGAATTCCCTGGTGCTGTTTCCATCCCATATTTTCACGTTTTTTTCTTGTAAAAT-T 13942 Query 118966 TTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAA 119025 || | || || ||| | | ||||||||||| || || |||| |||||||| || Sbjct 13941 TTGGCATTAGTTTGACCTTTGATGAACCAAAGAAGTTCTTCTGCAACACCTCTCCAGAAT 13882 Query 119026 ACTGTTTTTGTTGTAAACAGTGGAAACTGACCTCTAAGTGAATATCTTGTTTGTGTTCCA 119085 || ||||||| || || | |||||||||| |||| || | | || |||| ||| Sbjct 13881 ACCCTTTTTGTAGTTAATAATGGAAACTGATCTCTGAGATTAAACCTCATTTGACAACCA 13822 Query 119086 AAAATAGACAGAGTCCCAACACCTGTTCTATC 119117 || ||||||| ||| ||||| || || | ||| Sbjct 13821 AAGATAGACAAAGTGCCAACTCCGGTACGATC 13790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413309711175124