Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq80618 98.7 7e-16 seq229830 93.3 3e-14 seq160753 84.2 2e-11 >seq80618 Length=357 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || || ||| | ||||| || ||||| | || || ||| | Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| ||||| || || ||||||||||| | || || Sbjct 183 CGACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGAT 240 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || || || |||||||| |||||||| || | ||||| ||||||||| ||| Sbjct 241 CAACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTAC 300 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || | || ||||| |||||| | ||||| || Sbjct 301 AACATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 350 >seq229830 Length=7395 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| || || ||| | ||||| ||| ||||| | || || ||| Sbjct 5556 AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCA 5615 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| || ||| ||||| ||||| ||||| | || | Sbjct 5616 TCCGATACTATTGAAAAT--GTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAG 5673 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || || || || ||||||||||| || | ||||| ||| ||||| Sbjct 5674 ACCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATT 5733 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| || | || ||||| |||||| | ||||| || Sbjct 5734 ACAACATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGG 5785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| || || ||||| || ||||||||||| Sbjct 5880 GACAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAA 5939 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980 |||| ||||| ||||| || || ||||| |||||||| Sbjct 5940 GACGGACGCACATTGTCAGACTATAACATTCAAAAAGA 5977 >seq160753 Length=592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || |||||||| | || || |||||||| || || || || || ||||||||||| Sbjct 498 GATAAAGAAGGAATCCCTCCAGATCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAA 439 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| || || ||||| ||||||||||| ||| ||| | || |||||| | Sbjct 438 GATGGACGCACATTATCAGATTATAACATCCAAAAGGAGTCAACTCTTCACTTGGTTCTT 379 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 378 CGTCTTCGTGGTGG 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354860358317007