Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq80618 98.7 7e-16
seq229830 93.3 3e-14
seq160753 84.2 2e-11
>seq80618
Length=357
Score = 98.7 bits (108), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| ||||| || || ||| | ||||| || ||||| | || || ||| |
Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| || | ||| ||||| || || ||||||||||| | || ||
Sbjct 183 CGACACCATTGAAAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGAT 240
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| || || || |||||||| |||||||| || | ||||| ||||||||| |||
Sbjct 241 CAACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTAC 300
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || || | || ||||| |||||| | ||||| ||
Sbjct 301 AACATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 350
>seq229830
Length=7395
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| ||||| || || ||| | ||||| ||| ||||| | || || |||
Sbjct 5556 AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCA 5615
Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|||| | || | ||| || ||| ||||| ||||| ||||| | || |
Sbjct 5616 TCCGATACTATTGAAAAT--GTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAG 5673
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||| || || || || || ||||||||||| || | ||||| ||| |||||
Sbjct 5674 ACCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATT 5733
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| |||||||| || | || ||||| |||||| | ||||| ||
Sbjct 5734 ACAACATTCAAAAAGAATCAACCCTTCACTTGGTATTGCGTCTTCGTGGAGG 5785
Score = 87.8 bits (96), Expect = 1e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || ||||| || || ||||| || |||||||||||
Sbjct 5880 GACAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAA 5939
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980
|||| ||||| ||||| || || ||||| ||||||||
Sbjct 5940 GACGGACGCACATTGTCAGACTATAACATTCAAAAAGA 5977
>seq160753
Length=592
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| |||||||| | || || |||||||| || || || || || |||||||||||
Sbjct 498 GATAAAGAAGGAATCCCTCCAGATCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAA 439
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||||| || || ||||| ||||||||||| ||| ||| | || |||||| |
Sbjct 438 GATGGACGCACATTATCAGATTATAACATCCAAAAGGAGTCAACTCTTCACTTGGTTCTT 379
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 378 CGTCTTCGTGGTGG 365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354860358317007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |