Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq160753 158 3e-33 seq80618 140 7e-28 seq229830 136 9e-27 >seq160753 Length=592 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| ||||| ||||||||||||||||| | | || Sbjct 370 ACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGT 429 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| || ||||| |||||||| | ||||| || || ||||| | ||| Sbjct 430 GCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCC 489 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||||||||| || |||||||| || |||||||| |||||| || || Sbjct 490 TTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAG 549 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | || || || || | |||||| Sbjct 550 GGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||| ||||||||||| | | || | ||||||||||| |||| Sbjct 161 TGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCATCTTCCAACTGC 220 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | |||||||| || ||||| | |||||||| || || ||||| Sbjct 221 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTTA 280 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || |||||||| || ||||| || || ||||| || ||||| || Sbjct 281 GCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTTTCCAGTC 340 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | |||||| Sbjct 341 AAAGTTTTGACGAAAATCTGCAT 363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 |||||| | |||||||| || ||||| | |||||||| ||||| ||||| || || Sbjct 1 GAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAAC 60 Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 ||| ||||||||||| || |||||| || | |||||| ||||| || || | || || Sbjct 61 GTTCTCGATGGTGTCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTT 120 Query 211100 TACAAACACCTGCAT 211114 || || | ||||| Sbjct 121 GACGAAGATTTGCAT 135 >seq80618 Length=357 Score = 140 bits (154), Expect = 7e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || || ||||||||||| || || | | ||| | ||||||||||| || Sbjct 327 GTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCAATTG 268 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | |||||||| || || || | |||||| ||||| |||||||| Sbjct 267 CTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGGATCTT 208 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||||||| || |||||| || | || || ||||| || || Sbjct 207 GGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTTACCAGT 148 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || | ||||||| Sbjct 147 CAAAGTCTTGACGAAAATCTGCATT 123 >seq229830 Length=7395 Score = 136 bits (150), Expect = 9e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || |||||| | | || | |||||| || || |||||||| ||||| ||||| | ||| Sbjct 5783 TCCACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAA 5724 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | | | ||||||||||| || ||||| |||||||| | ||||| ||||| || || | Sbjct 5723 AG-TGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGA 5665 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||||||||| || || ||| || ||||| || || || || |||||||| Sbjct 5664 TTCCTTCCTTGTCCTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCT 5605 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | || || || || || || | |||||| || || | |||||| || Sbjct 5604 CCAAGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 129 bits (142), Expect = 1e-24 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | | ||| | ||| ||||| || |||||||| |||||||| || ||| || Sbjct 159 CGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTG 100 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| |||||||| || || || || || || ||||| || ||||||| ||| Sbjct 99 CGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCT 40 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||||||||||||||| ||| |||||||| |||||| Sbjct 39 TCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATGGTG 1 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| ||||||||||||||||| | | || | ||||||| Sbjct 7388 AGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGACAATGTGCGTCCATCT 7329 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||| || ||||| ||||| || | |||||||| || ||||||| Sbjct 7328 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAA 7283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155720663397965