Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq229830 158 8e-34 seq160753 129 4e-25 seq80618 109 4e-19 >seq229830 Length=7395 Score = 158 bits (174), Expect = 8e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || |||||||| ||||| | |||||||| | | Sbjct 5787 ATGCAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCT 5846 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || |||||||||||| | || ||||||||| Sbjct 5847 GACACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 5906 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||| ||||||||| |||||| || || || ||| Sbjct 5907 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAAC 5966 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||| | |||||||| ||| | | ||||||| Sbjct 5967 ATTCAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGAGGAGG 6013 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | || || ||||| || || | || ||||| | Sbjct 5556 AATATGCAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCA 5615 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| ||| |||| ||||| | |||||| ||||| ||||| | || ||||| Sbjct 5616 TCCGATACTATTGAAAATGTTAAAGC-TAAAATTCAGGACAAGGAAGGAATCCCCCCAGA 5674 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||||| || || || ||||||||| ||||||| | ||||||||| ||||||| Sbjct 5675 CCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTA 5734 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| |||||||| || || Sbjct 5735 CAACATTCAAAAAGAATCAAC 5755 Score = 118 bits (130), Expect = 7e-22 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || ||||| || || || | |||||||| | | Sbjct 6015 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCT 6074 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || ||| |||||||||||| | || ||||||| | Sbjct 6075 GACACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATC-A 6133 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| |||||| ||||||| | ||||||||| |||| ||||| Sbjct 6134 CAACGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAAT 6193 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || || ||| | | | |||||||| Sbjct 6194 ATCCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGAGGAGG 6240 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||| | || |||||||| || || || ||| Sbjct 32 GACAAGGAAGGCATTCCTCCAGATCAACAGCGTCTCATTTTTGCCGGAAAGCAGCTCGAA 91 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| | |||| || ||||| |||||||| || || | || || || || Sbjct 92 GATGGCCGCACTCTTAGCGACTATAACATTCAAAAAGAATCTACTCTCCACTTGGTCTTG 151 Query 23824 AGGTTGCGAGGAGGATCA 23841 | | || |||||| || Sbjct 152 CGTCTTCGCGGAGGAGCA 169 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 23713 GGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGC 23772 ||| | || ||||||||||| ||||| || || || ||||||||| ||||||| | |||| Sbjct 7279 GGTATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGC 7338 Query 23773 ACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| ||||| ||||| ||||| || | || || ||| Sbjct 7339 ACATTGTCAGATTATAACATCCAAAAGGAGTCAACTCTTCACTTGGTT 7386 >seq160753 Length=592 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | || |||||||| ||||| || |||||||| | | Sbjct 363 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCA 304 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | || || || |||||| | || |||||||| Sbjct 303 GACACCATTGAGAACGTTAAGGCTAAGA-TTCAAGATAAGGAAGGTATCCCTCCAGATCA 245 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||| || || ||||||| | |||||| || ||||| || Sbjct 244 ACAACGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAA 185 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| ||||| || | ||||| || || Sbjct 184 CATTCAAAAGGAGTCAACCCTTCATTTGGTATT 152 >seq80618 Length=357 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || || || || || || | |||||||| | | Sbjct 123 AATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTC 182 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 183 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCA 242 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||| || ||| ||||||| | |||||| || ||| ||||| Sbjct 243 ACAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCACCTTGTCCGACTACAA 302 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 303 CATCCAAAAGGAATCTAC 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337057828448828