Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq80618 145 2e-29 seq11493 145 2e-29 seq229830 138 3e-27 seq160753 123 6e-23 >seq80618 Length=357 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || || ||||| ||||||| ||||| |||| ||| || Sbjct 345 ACGGAGACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 286 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || |||||||| | |||||||| || || || || || Sbjct 285 GCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCC 226 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| ||| ||| |||||||| || | ||| || || || Sbjct 225 TTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAA 166 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || |||||||| || | ||| | |||||| Sbjct 165 GGTAATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATT 123 >seq11493 Length=9723 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 |||| || |||| |||| || || ||| |||| || ||||| ||| |||| ||||| || Sbjct 999 TGGTGATGACCAAATTTATAATGTAATTGTTACTGCCCATGCATTTATTATAATTTTTTT 1058 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | | || || || |||| ||||| || || ||||||||||| || || ||||| | || Sbjct 1059 TATAGTAATACCTATTATAATAGGAGGATTTGGAAATTGATTAGTCCCCTTAATATTAGG 1118 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || |||||||||||||||||| | | || ||||||||||||||| |||| || ||||| Sbjct 1119 GGCACCTGATATGGCTTTTCCACGAATAAATAATATAAGTTTTTGAATACTTCCCCCTTC 1178 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||| ||||||||| || || ||||| || || || | Sbjct 1620 TTCAGGGTGTCCAAAAAATCAAAATAGATGTTGATATAGAATTGGATCTCCCCCTCCCGC 1561 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||| || ||||||||||||| || ||||| Sbjct 1560 AGGATCAAAGAATGATGTATTAAAATTTCGGTCTGTTAA 1522 >seq229830 Length=7395 Score = 138 bits (152), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| ||||| ||||| ||||||| |||||| ||| ||||| Sbjct 6234 CGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTG 6175 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || || || ||||| || |||||| | || || ||||||||| Sbjct 6174 CGACCATCTTCCAATTGTTTACCGGCAAAGATGAGACGTTGT-GATCTGGAGGAATACCT 6116 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| ||||| ||| || ||| || ||||| || | || || ||||| Sbjct 6115 TCTTTGTCTTGAATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAG 6056 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||||||| || | ||| | |||||| Sbjct 6055 GTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 6015 Score = 131 bits (144), Expect = 4e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||||||||| | ||||||||| |||||| Sbjct 5780 ACGAAGACGCAATACCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGT 5721 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||||||||| | ||||| ||||| || || || || Sbjct 5720 GCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCC 5661 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| || || ||| || || ||| ||| || || || || | ||| || || | Sbjct 5660 TTCCTTGTCCTGAAT-TTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCA 5602 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || || || || |||||||| || | ||| | ||||| || Sbjct 5601 AGGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||||||||| | || || || | ||| || | || ||||| | || Sbjct 5989 TGGAGTGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGTCCGTCTTCCAATTGT 5930 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | |||||||| || || ||||||||||| |||||||||||||| Sbjct 5929 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTG 5870 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| || ||||| || | || || || || ||||| || || || ||| Sbjct 5869 GCCTTAACGTTTTCAATTGTGTCAGAAGGCTCAACTTCCAATGTGATGGTTTTTCCAGTC 5810 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | |||||| Sbjct 5809 AAGGTTTTGACGAAAATTTGCAT 5787 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||| | ||||||||| ||||||||||| | || || ||| | ||| Sbjct 159 CGAAGACGCAAGACCAAGTGGAGAGTAGATTCTTTTTGAATGTTATAGTCGCTAAGAGTG 100 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || || || || || || ||||| || || ||||| ||| Sbjct 99 CGGCCATCTTCGAGCTGCTTTCCGGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCT 40 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 39 TCCTTGTCCTGGATCTT 23 >seq160753 Length=592 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||| | || ||||| | ||| || | |||||||| | |||| Sbjct 161 TGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCATCTTCCAACTGC 220 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | |||||||| || || || ||||||||||| ||||| ||||| Sbjct 221 TTTCCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTTA 280 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || ||||||||||| | || || || | ||||| || || || ||| Sbjct 281 GCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTTTCCAGTC 340 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | ||||| Sbjct 341 AAAGTTTTGACGAAAATCTGCAT 363 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| || || ||||||| || ||||| | || || Sbjct 370 ACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGT 429 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||||||||| | ||||| || || || || || || Sbjct 430 GCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCC 489 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || |||||||| ||| || ||| || ||||| || | ||| || || | Sbjct 490 TTCTTTATCCTGGATCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAG 549 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| ||||| ||||| | ||| | ||||| Sbjct 550 GGTGATAGTTTTGCCAGTCAAGGTTTTGACGAAGATCTGCAT 591 Score = 104 bits (114), Expect = 6e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 |||||| | |||||||| || || || ||||||||||| || || ||||| ||| || Sbjct 1 GAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCCTGAATCTTAGCCTTAAC 60 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||||||||| | ||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 61 GTTCTCGATGGTGTCTGATGGTTCAACTTCTAAAGTGATGGTCTTACCAGTCAAGGTTTT 120 Query 225699 TATGAACACTTGCAT 225713 | ||| | |||||| Sbjct 121 GACGAAGATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189001053862454