Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq54449 455 4e-123 seq55846 93.3 6e-14 seq11307 89.7 7e-13 >seq54449 Length=2482 Score = 455 bits (504), Expect = 4e-123 Identities = 590/810 (73%), Gaps = 5/810 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||||||||||||||| ||||||||| || ||||| ||||||| |||| |||||||| Sbjct 299 GCGGGTTTTGTACGTAAATAGTACATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAA 358 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| || | ||| ||| | || || |||| ||||||||| | ||||||||| Sbjct 359 TGCATTGAAGTTAATTTTCCATAGTTTGGTTCTGCTACATGAATATTGAATGACTGACTT 418 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGA-ATTTC 76981 ||||| || ||||| ||||||||||| ||||||| || | | ||| ||| ||||| Sbjct 419 TGATCAATAAAAGCACCTCTATCAGCAGCCATTTGAATTGTAGA-TTTAATGGATATTTC 477 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG-TTTGTATTT--TGAATGGA 77038 ||||| |||||| ||| || | |||||| |||||| ||| |||| || || || Sbjct 478 CCAAACAGTTTTATAAAGTTCTCTGATATGTGCTGGAATTCTTTCGATTTCTTGTATAGA 537 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 ||||| | ||| |||||| || || |||||||| | ||| || | ||||||||| Sbjct 538 ACCACGTTTTGAAATAATTTCGTTTTTCATATCATCGTCCCATAAATCAAGCTCTGTTAA 597 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | | || | ||| | || || | ||| || || ||||| ||||||| ||| | || Sbjct 598 GTCCTTGAGCAAATGGTGGTTTACAACTTGGAACTCACCAGATAATACTCGACGGTTATA 657 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 |||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 658 AATATTTGAAGTATATGGTTCGAATGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 717 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 ||||||||| ||||| | |||||| |||||| | ||||| | |||||||| || Sbjct 718 AGTTGGCATTGGTGCAATCAATAATGAATTTCTTACTCCATGAACCTTTATTTTATCCTT 777 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 |||| || ||||||||| | ||| | || ||||| | ||| ||||||| || Sbjct 778 TAGAGCTTGCCAATCCCACAAATCAGTTGGGGTTTTGTCCCACATATCATATTGTAAGAT 837 Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || ||| | ||| | |||||||||||||| || ||| ||||||| ||||| Sbjct 838 TCCTTTGCTAACTGGGCTTCCCTCATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTC 897 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| ||||| | ||||| ||||||||||| || || || | || ||| || || Sbjct 898 ACAACTTGCTTCAAGAGCTCCATAATAAATTGTCTCAAATATTTGCTGATTAAGCAACTG 957 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 || | ||| || | |||||| | | |||||| || ||||| | || || || || Sbjct 958 AGCCTTTTCACTTTCGTAAGGATAACGCATAAGAATCAAAGCATCAGAGAAACCTTGTAC 1017 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATA 77578 || || || ||||| || || | ||| || || ||||||| || | |||||||| Sbjct 1018 ACCGATCCCGATAGGCCTGTGACGTAAATTTGACTTTCTAGCTTCAGGCAATGGATAATA 1077 Query 77579 ATTAATGTCTATAATTTTATTGAGATTTCT 77608 ||||| ||||| ||||| || | |||||| Sbjct 1078 ATTAACATCTATTATTTTGTTTAAATTTCT 1107 Score = 387 bits (428), Expect = 2e-102 Identities = 673/965 (70%), Gaps = 19/965 (2%) Strand=Plus/Plus Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCG 77738 ||||| || |||| ||||||||| || | |||| | | ||| | || || || Sbjct 1285 GCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCA 1344 Query 77739 GTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCAT 77798 || || ||||||||||| || || || || | ||||||||| || |||||| | ||||| Sbjct 1345 GTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAA 1404 Query 77799 GAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTC 77858 | || || || | ||| | ||||| || ||||| | ||||| || ||||| | | | Sbjct 1405 GCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATAC 1464 Query 77859 CAGACGACTCTAGCTTTTATCATAGA-TTTGTATCGCCTCTCTCTTTCATATTGAGTATA 77917 |||| | ||||||||| | |||| | ||| || ||||||| | | |||| Sbjct 1465 CAGAGTTGTTGAGCTTTTATTTTCCTGTTTGCTTTTCCT-TCATTTTCATACTTAATATA 1523 Query 77918 TAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACAT 77977 || |||||||| || ||||||||||| | |||||| || |||| | || ||||| Sbjct 1524 GAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACAT 1583 Query 77978 CAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037 | ||||| || | || ||| ||| ||||||||||| | ||| || ||||||| ||| Sbjct 1584 AAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGC 1643 Query 78038 AATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAA 78097 || ||||||| | || | ||||| |||||||| || || || | ||| | ||| Sbjct 1644 GTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCAAATCCAAAAA 1703 Query 78098 CTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157 || | |||||| |||||||| ||||| | ||| ||||| | ||||||| | || || Sbjct 1704 TTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTT 1763 Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||||| ||||||| ||||| ||| ||||| | ||||| ||||| |||| | ||| Sbjct 1764 GCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACC 1823 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA----TTACTAA 78273 || || |||||||| ||||||| |||| | || | || |||||| ||| | Sbjct 1824 ATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTAC--A 1881 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA-TCG 78332 | || || ||||| ||||| ||| || || | ||| || | ||||| | | | | Sbjct 1882 T--TTAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTG-TTCAACGGACTTG 1938 Query 78333 TAGATACCCTCTAT--ACTGTCATC-CATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 |||| || ||||| | | | | | ||| |||| ||||||||||| ||||| |||| Sbjct 1939 AAGATCCCTTCTATGGAATCTGAGCACAT--TGTT-AGAAGAAAACATGAAGACAATTGA 1995 Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449 | || | ||| |||||| || ||||| || || |||| | ||||||| Sbjct 1996 GGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGAT 2055 Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACA 78509 | ||||| ||||| |||||||||| |||||||| | |||||||||||| || || Sbjct 2056 AAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACT 2115 Query 78510 CGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGAT 78569 | ||| | ||| || |||||||||||| | | || |||||| ||||| | ||||| Sbjct 2116 CTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAGATATGAG 2175 Query 78570 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACA 78629 ||||| |||||||| ||||| || |||||| ||| |||| || ||||| ||| Sbjct 2176 CGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAATGATAGAT 2234 Query 78630 GAATT 78634 ||||| Sbjct 2235 GAATT 2239 >seq55846 Length=11783 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 43294 AATTCCCAATTCCTTGACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAAATA 43353 || ||| | ||| || || ||||||||||| | ||||||||| || |||||||| | || Sbjct 10808 AACTCCTAGTTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTA 10867 Query 43354 AATATGTCTATTATCTGATATCCAAAATTTAGTATGAAGAACTCCACCT 43402 || ||| |||||| | |||||||| ||||| ||||||||||| ||| Sbjct 10868 AAAGTGTTGATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCCT 10916 >seq11307 Length=4647 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 |||| ||| || ||||| ||||||| || || ||||| ||||| ||||||| ||||| Sbjct 3747 AAATGCTTTCTTAGTTTCTTTGTGTAAGTTGGAAACAGCAATTCTAGCAGCTAAGATAGC 3806 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 |||||| | ||||| ||| || |||| ||||| |||| || || | | |||| | || Sbjct 3807 ATAATCTGCATGTTTTGTGGTCAAAGTTGCTGCCGTTTCAGCGGCGAGATTATCCAGTTC 3866 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | ||| || || || | | || || | |||||| || Sbjct 3867 TTGAGTCGTTACACCGCAAAAAAGGCCGTTAATAACCTT 3905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692662587822240