Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq54449 459 4e-124 seq55846 96.9 5e-15 seq11307 84.2 3e-11 >seq54449 Length=2482 Score = 459 bits (508), Expect = 4e-124 Identities = 677/953 (71%), Gaps = 8/953 (1%) Strand=Plus/Plus Query 75362 TTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTAC 75421 ||||| || || | ||||| || || | | || || ||||||||||||| ||||||| Sbjct 263 TTATTTTTGTCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTAC 322 Query 75422 ATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAA 75481 || || ||||| ||||||| |||| ||||||||||||| |||| ||| ||| Sbjct 323 ATTCCTGTTTTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAG 382 Query 75482 CTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCA 75541 | || || |||| ||||||||| | |||||||||||||| || ||||| ||||||||| Sbjct 383 TTTGGTTCTGCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCA 442 Query 75542 GCCGCCATTTTTATAATGGTCTTTTGAGGA-ATTTCCCAAATAGTTTTGAAAACTTGTTT 75600 || ||||||| || | | ||| ||| |||||||||| |||||| ||| || | | Sbjct 443 GCAGCCATTTGAATTGTAGA-TTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCT 501 Query 75601 GATATCATCTGGAAGA-TTTGTATTT--TGAATGGATCCGCCATCAGATATAATTGTATT 75657 ||||| |||||| ||| |||| || || || || | | || |||||| || Sbjct 502 GATATGTGCTGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTT 561 Query 75658 CTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 75717 || || ||||| | ||| || | ||| ||||| | | || | ||| | || || Sbjct 562 TTTCATATCATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTGAGCAAATGGTGGTTTAC 621 Query 75718 AATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 || ||| || || ||||| ||||||| || | |||||||| ||||||||||| | Sbjct 622 AACTTGGAACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAA 681 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 |||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| Sbjct 682 TGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAA 741 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 |||||| | ||||| | |||||||| |||||| || ||||||||| | ||| Sbjct 742 TGAATTTCTTACTCCATGAACCTTTATTTTATCCTTTAGAGCTTGCCAATCCCACAAATC 801 Query 75898 TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATT 75957 | ||| ||||| | ||| ||||||| ||||| |||||| | ||| | Sbjct 802 AGTTGGGGTTTTGTCCCACATATCATATTGTAAGATTCCTTTGCTAACTGGGCTTCCCTC 861 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||||||||| ||||| || || |||||||| ||||| ||||| || || | || || || Sbjct 862 ATATGTTTCATAAGTACCCTCTTTTTCAGCAAGTTCACAACTTGCTTCAAGAGCTCCATA 921 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||||||| || || || | || |||||| || || | ||| || ||||||| Sbjct 922 ATAAATTGTCTCAAATATTTGCTGATTAAGCAACTGAGCCTTTTCACTTTCGTAAGGATA 981 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | |||||| || ||||| | | || || || || || || ||||| || || | Sbjct 982 ACGCATAAGAATCAAAGCATCAGAGAAACCTTGTACACCGATCCCGATAGGCCTGTGACG 1041 Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197 ||| || || |||||| || | || |||||||||| |||||| ||||| || | Sbjct 1042 TAAATTTGACTTTCTAGCTTCAGGCAATGGATAATAATTAACATCTATTATTTTGTTTAA 1101 Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC---CATC 76254 ||||||| | | ||| || || || | ||| | |||||| |||| | || | Sbjct 1102 ATTTCTGGTTATAATTTTTGTAACTTCTTTCAATTTTGGGAAATCATATTTACGATCAGC 1161 Query 76255 TATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 | | | || |||||| ||||| || |||| |||||||||||| | |||| Sbjct 1162 AGTTATATACTGATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCAT 1214 Score = 381 bits (422), Expect = 8e-101 Identities = 676/972 (70%), Gaps = 19/972 (2%) Strand=Plus/Plus Query 76267 ATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTAT 76326 |||||| ||||| || |||| |||||||||||| | |||| | | | ||| | || Sbjct 1278 ATTAAGTGCTATGGAAGCTAAATTACAAACGGCGATTTCATCTGGAGCAGAATACTCTAC 1337 Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 || || ||||| |||||||||||||| || || |||| ||||||||| || |||||| | Sbjct 1338 GATTTCAGTGCAGAGATTACTACACTTAATTGTACCAACATTTTGTTGATTACTCTTTCT 1397 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 ||| || | || || || | | | | |||||||||||||| | ||||| || ||||| Sbjct 1398 GTTGCAAGCATCTTTGTACAACATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAAT 1457 Query 76447 AGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTC--TC--TTTCAT 76502 | | ||||| | |||||||||| | ||| | |||| || || |||||| Sbjct 1458 TGCATACCAGAGTTGTTGAGCTTTTATTTTCC---TGTTT-GCTTTTCCTTCATTTTCAT 1513 Query 76503 ATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCAT 76562 | | |||| | |||||||| || ||||||||||| | ||| || ||||||| | Sbjct 1514 ACTTAATATAGAGTTTCTCAAATTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGT 1573 Query 76563 TCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTA 76622 |||||||| | ||||| || | || ||| ||| ||||||||||| | ||| || | Sbjct 1574 GAGGACACATAAGAGACCAATCTTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAA 1633 Query 76623 TCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAA 76682 |||||| ||| || ||||||| | || ||||| |||||||| || || || | Sbjct 1634 TCCATAAAGCGTAGAAAAGATCTCTAGCTCGGTTCTCTTCTTTTCCTGTGTTTTTCTTCA 1693 Query 76683 GATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCG 76742 ||| | || || | |||||| |||||||| ||||| | ||| || || | | || | Sbjct 1694 AATCCAAAAATTCAAAAATATCTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAG 1753 Query 76743 GTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTG 76802 | | || || ||||| ||||||| ||||| |||| ||||| | ||||| ||||| | Sbjct 1754 GCCTCTTGTTGCCTCCTTGATCTACATATCGGGCAACATTATTGAAGACTCTTAACATGG 1813 Query 76803 GAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT 76862 ||| | || || || || ||||| ||||||| |||| | || || |||||| Sbjct 1814 GAACTAAACCATTTGAAGTTCCATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATAC 1873 Query 76863 TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATG 76922 | | || || ||||| ||||| || || || | |||||| ||| ||| | Sbjct 1874 AGTGTACATTTAATCCGATTCCGCCTGCAGACTTGGAAATCATAGCACATTGTT-CAACG 1932 Query 76923 TGTCAT--AGATGCCCTCTATACTATC--ATC-CATCATGTTAAGAAGAAAACAGCTAGA 76977 | | | |||| || ||||| ||| | | ||| ||||| |||||||||| ||| Sbjct 1933 -GACTTGAAGATCCCTTCTATGGAATCTGAGCACAT--TGTTA-GAAGAAAACATGAAGA 1988 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 || |||| | || | ||| ||| || || ||||| || ||| | || | | Sbjct 1989 CAATTGAGGCCTTGGTGTGGCAGCAGCAAATAACGTTGGAGAGGCGTGAATAAAATACCT 2048 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTAC 77097 |||||| | ||||| ||||| |||||| |||| ||||| || | |||||||||||| Sbjct 2049 TTCAGATAAAAGATTATATGTCTCAATAGCTGCATCTATGTCGTTTCCATGAATTCCTAC 2108 Query 77098 AGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAA 77157 |||||| | ||| | ||| || ||||||| ||| || | || |||||| ||||| | Sbjct 2109 AGCGACTCTCATAAGCATGTGTTGAGGTCTTTCAGCAATTTTTCCATTTATCTTCAAAAG 2168 Query 77158 GTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT 77217 ||||| ||||| |||||||| ||||| || |||||| ||| |||| || ||||| Sbjct 2169 ATATGAGCGCTCCAATGTTTTAAATCCAAAGTAATTGTATCCAAA-ACTCTATCATAAAT 2227 Query 77218 AATAACCGAATT 77229 ||| ||||| Sbjct 2228 GATAGATGAATT 2239 >seq55846 Length=11783 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41821 AATTCCCAATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATA 41880 || ||| | ||| ||||| |||| ||||| |||||||||||||| |||||||| | || Sbjct 10808 AACTCCTAGTTCTTTAACTTGTGTTAGAGACCTCCAATCCATATTCGCACTTCCAATGTA 10867 Query 41881 AATATGCATATTATCAGATATCCAAAATTTTGTGTGAAGAACTCCACC 41928 || || |||||||| |||||||| || |||||||||||||| || Sbjct 10868 AAAGTGTTGATTATCAGCTATCCAAATCTTAGTGTGAAGAACTCCGCC 10915 >seq11307 Length=4647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 |||| ||| || ||||| ||||||| || || || || ||||||||||||| || || Sbjct 3747 AAATGCTTTCTTAGTTTCTTTGTGTAAGTTGGAAACAGCAATTCTAGCAGCTAAGATAGC 3806 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 ||| || | ||||| ||| || | || ||||| |||| || || | | |||| | ||| Sbjct 3807 ATAATCTGCATGTTTTGTGGTCAAAGTTGCTGCCGTTTCAGCGGCGAGATTATCCAGTTC 3866 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 | ||| || || ||| | | || || | |||||| || Sbjct 3867 TTGAGTCGTTACACCGCAAAAAAGGCCGTTAATAACCTT 3905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710875436541120