Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq160753 114 3e-20 seq229830 111 4e-19 seq80618 111 4e-19 >seq160753 Length=592 Score = 114 bits (126), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 |||||| || ||||| ||||| ||||| ||||| | || || | |||||||| | | Sbjct 160 ATGAAGGGTTGACTCCTTTTGAATGTTATAATCTGACAATGTGCGTCCATCTTCCAACTG 219 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| ||||||||||| | | || || || | | ||| |||||||| |||||||| Sbjct 220 CTTT--CCGGCGAAGATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATC 277 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || || |||| | | ||||||| ||| |||||||| || |||||||| || Sbjct 278 TTAGCCTTAACGTTCTCAATGGTGTCTGATGGCTCAACTTCAAGGGTGATAGTTTTTCCA 337 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | ||| || ||||| | |||||| Sbjct 338 GTCAAAGTTTTGACGAAAATCTGCAT 363 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| ||||||||||| ||||| | ||| || | |||||||| | Sbjct 385 CAAG-TGAAGAGTTGACTCCTTTTGGATGTTATAATCTGATAATGTGCGTCCATCTTCCA 443 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || |||||||| | | ||||| || | | ||||||||| || || || | Sbjct 444 ATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCTTTATCCTGGA 503 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || || |||||||| || |||||||||| Sbjct 504 TCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCAAGGGTGATAGTTTTGC 563 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || ||||||| |||||| Sbjct 564 CAGTCAAGGTTTTGACGAAGATCTGCAT 591 >seq229830 Length=7395 Score = 111 bits (122), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || |||||||| |||||||||||| ||||| | |||||||| | Sbjct 5765 CAAG-TGAAGGGTTGATTCTTTTTGAATGTTGTAATCGCTCAAAGTGCGTCCATCTTCCA 5707 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || |||||||| | | |||||||| | | |||||||||||| || |||| Sbjct 5706 ATTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAA 5647 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | | || || || || || | ||||| ||||| | Sbjct 5646 TTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAAGGTAATTGTTTTAC 5587 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||| | |||||| || Sbjct 5586 CAGTCAAAGTCTTGACGAAAATCTGCATATT 5556 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || |||||||| ||||| ||| |||||| | |||||||| | Sbjct 6220 CAAG-TGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAAAGTGCGACCATCTTCCA 6162 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||| ||||| || | || || || | | || ||||| || ||||||| Sbjct 6161 ATTGTTTACCGGCAAAGATGAGACGTTG-TGATCTGGAGGAATACCTTCTTTGTCTTGAA 6103 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||| ||||| | |||||||| || | Sbjct 6102 TCTTAGCCTTGACGTTTTCAATTGTGTCAGATGGCTCAACTTCTAAGGTAATAGTCTTTC 6043 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| ||||| Sbjct 6042 CAGTCAAAGTCTTGACGAAGATTTGCAT 6015 >seq80618 Length=357 Score = 111 bits (122), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || |||||||||||||| |||| || || | |||||||| | Sbjct 330 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCA 272 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||||||||| | | || || || | | ||||||||| || ||||| Sbjct 271 ATTGCTTT--CCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 214 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| ||| || ||||| | ||||| || || Sbjct 213 GATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTAATGGTCTT 154 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || | |||||| ||||| | ||||||| Sbjct 153 ACCAGTCAAAGTCTTGACGAAAATCTGCATT 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150405244884511