Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq160753 165 2e-35
seq229830 145 2e-29
seq80618 136 9e-27
>seq160753
Length=592
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| |||||| | || |||||||| |||||||| || || || ||||||
Sbjct 360 CAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCAGAC 301
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || |||||||| || || ||||| |||||||| || || |||
Sbjct 300 ACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAACAA 241
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||| | ||||||||| | || | | ||||||||| |
Sbjct 240 CGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAACATT 181
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||||| || ||||| || ||| | || ||| | |||
Sbjct 180 CAAAAGGAGTCAACCCTTCATTTGGTATTGCGTCTC 145
Score = 150 bits (166), Expect = 4e-31
Identities = 159/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| | || || ||||| |||||||| || || ||| || |||
Sbjct 588 CAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCTGAC 529
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| ||||| ||||| ||||||||||||||||| || ||||||
Sbjct 528 ACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAGCAA 469
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || ||||| | ||||||||| | || | | ||||||||| ||
Sbjct 468 CGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATAACATC 409
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
||||| || ||||| || || |||| ||
Sbjct 408 CAAAAGGAGTCAACTCTTCA-CTTGGTT 382
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| | || || || || ||||| | || || ||| ||||||
Sbjct 132 CAAATCTTCGTCAAAACCTTGACTGGTAAGACCATCACTTTAGAAGTTGAACCATCAGAC 73
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || ||||||||||| || ||||| |||||||| || || |||
Sbjct 72 ACCATCGAGAACGTTAAGGCTAAGATTCAGGATAAGGAAGGTATCCCTCCAGATCAACAA 13
Query 178044 CGACTTATCTTC 178055
|| | ||||||
Sbjct 12 CGTTTGATCTTC 1
>seq229830
Length=7395
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || || ||||| || ||| | ||||| ||| || ||
Sbjct 5562 CAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCCGAT 5621
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || ||||||||||| ||||||||||| || |||||||||
Sbjct 5622 ACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAGCAA 5681
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || ||||| | ||||||||| | ||| | |||||| ||| |
Sbjct 5682 CGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTACAACATT 5741
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|||||||||||||| || || ||||
Sbjct 5742 CAAAAAGAATCAACCCTTCA-CTTG 5765
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| | || |||||||| ||||| | || || || || |||
Sbjct 5790 CAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCTGAC 5849
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| || ||||||||||| || ||||| || || |||
Sbjct 5850 ACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 5909
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || ||||| | ||||| ||| | || | | || |||||| |
Sbjct 5910 CGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAACATT 5969
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| ||||| ||| | || || | ||||||
Sbjct 5970 CAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGA 6008
Score = 125 bits (138), Expect = 2e-23
Identities = 116/146 (79%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|||||| || ||||||||| ||||| |||||||| ||||| || ||||| || || ||
Sbjct 1 CACCATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACA 60
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|| || || || |||||||| |||||||||||||| | |||||| ||| |||||| |
Sbjct 61 GCGTCTCATTTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTTAGCGACTATAACAT 120
Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128
||||||||||| || || || ||||
Sbjct 121 TCAAAAAGAATCTACTCTCCA-CTTG 145
Score = 120 bits (132), Expect = 7e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | || ||||| || || ||| | || || || || |||
Sbjct 6018 CAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCTGAC 6077
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||||| ||||||||||| || ||||| || || |||
Sbjct 6078 ACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCA-CAA 6136
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| ||||| | |||||||| | ||| | ||| || || ||
Sbjct 6137 CGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAATATC 6196
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
||||| ||||| || || || |||| ||
Sbjct 6197 CAAAAGGAATCTACTCTTCA-CTTGGTT 6223
>seq80618
Length=357
Score = 136 bits (150), Expect = 9e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || || || || || ||| | || || ||| || |||
Sbjct 127 CAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTCCGAC 186
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| || ||||||||||||||||| || || || |||
Sbjct 187 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAACAA 246
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||||||||| || | ||||||||| | || |||| |||| || ||| |
Sbjct 247 CGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCAC-CTTGTCCGACTACAACAT 305
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|||||| ||||| || || || | || ||| | |||
Sbjct 306 CCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTC 342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1200167899478954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |