Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq160753 165 2e-35 seq229830 145 2e-29 seq80618 136 9e-27 >seq160753 Length=592 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| |||||||| || || || |||||| Sbjct 360 CAGATTTTCGTCAAAACTTTGACTGGAAAAACTATCACCCTTGAAGTTGAGCCATCAGAC 301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||| || || ||||| |||||||| || || ||| Sbjct 300 ACCATTGAGAACGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCAGATCAACAA 241 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||| | ||||||||| | || | | ||||||||| | Sbjct 240 CGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGCACATTGTCAGATTATAACATT 181 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || ||||| || ||| | || ||| | ||| Sbjct 180 CAAAAGGAGTCAACCCTTCATTTGGTATTGCGTCTC 145 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || || ||||| |||||||| || || ||| || ||| Sbjct 588 CAGATCTTCGTCAAAACCTTGACTGGCAAAACTATCACCCTTGAAGTTGAACCATCTGAC 529 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| ||||| ||||||||||||||||| || |||||| Sbjct 528 ACAATTGAAAACGTCAAGGCTAAGATCCAGGATAAAGAAGGAATCCCTCCAGATCAGCAA 469 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||||||| | || | | ||||||||| || Sbjct 468 CGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCAGATTATAACATC 409 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || ||||| || || |||| || Sbjct 408 CAAAAGGAGTCAACTCTTCA-CTTGGTT 382 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || || || ||||| | || || ||| |||||| Sbjct 132 CAAATCTTCGTCAAAACCTTGACTGGTAAGACCATCACTTTAGAAGTTGAACCATCAGAC 73 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||||||||| || ||||| |||||||| || || ||| Sbjct 72 ACCATCGAGAACGTTAAGGCTAAGATTCAGGATAAGGAAGGTATCCCTCCAGATCAACAA 13 Query 178044 CGACTTATCTTC 178055 || | |||||| Sbjct 12 CGTTTGATCTTC 1 >seq229830 Length=7395 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || ||||| || ||| | ||||| ||| || || Sbjct 5562 CAGATTTTCGTCAAGACTTTGACTGGTAAAACAATTACCTTGGAGGTTGAACCATCCGAT 5621 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||||||||| ||||||||||| || ||||||||| Sbjct 5622 ACTATTGAAAATGTTAAAGCTAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAGCAA 5681 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||||||| | ||| | |||||| ||| | Sbjct 5682 CGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACTTTGAGCGATTACAACATT 5741 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||||||||| || || |||| Sbjct 5742 CAAAAAGAATCAACCCTTCA-CTTG 5765 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| ||||| | || || || || ||| Sbjct 5790 CAAATTTTCGTCAAAACCTTGACTGGAAAAACCATCACATTGGAAGTTGAGCCTTCTGAC 5849 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| || ||||||||||| || ||||| || || ||| Sbjct 5850 ACAATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 5909 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| ||| | || | | || |||||| | Sbjct 5910 CGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACATTGTCAGACTATAACATT 5969 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||||| ||| | || || | |||||| Sbjct 5970 CAAAAAGAATCTACACTCCATTTAGTATTACGTCTCAGA 6008 Score = 125 bits (138), Expect = 2e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||| || ||||||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 1 CACCATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAACA 60 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || || || |||||||| |||||||||||||| | |||||| ||| |||||| | Sbjct 61 GCGTCTCATTTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTTAGCGACTATAACAT 120 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 121 TCAAAAAGAATCTACTCTCCA-CTTG 145 Score = 120 bits (132), Expect = 7e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| || || ||| | || || || || ||| Sbjct 6018 CAAATCTTCGTCAAGACTTTGACTGGAAAGACTATTACCTTAGAAGTTGAGCCATCTGAC 6077 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||| ||||||||||| || ||||| || || ||| Sbjct 6078 ACAATTGAAAACGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCA-CAA 6136 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| | |||||||| | ||| | ||| || || || Sbjct 6137 CGTCTCATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACTTTAAGCGACTACAATATC 6196 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 6197 CAAAAGGAATCTACTCTTCA-CTTGGTT 6223 >seq80618 Length=357 Score = 136 bits (150), Expect = 9e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || || || || ||| | || || ||| || ||| Sbjct 127 CAGATTTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTGGAAGTTGAACCTTCCGAC 186 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||||||||||||||| || || || ||| Sbjct 187 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGATCAACAA 246 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| || | ||||||||| | || |||| |||| || ||| | Sbjct 247 CGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGCAC-CTTGTCCGACTACAACAT 305 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||| ||||| || || || | || ||| | ||| Sbjct 306 CCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTCTC 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200167899478954