Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 >seq25 Length=3544016 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| | |||| |||||||||||||||| || || ||||| || ||| Sbjct 2908034 ATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGA 2908093 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||||||||| || || || | |||||||||||| ||||||||| | || Sbjct 2908094 AAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGA 2908153 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAA 16632 |||||||| || || || ||| || ||||| || || || Sbjct 2908154 TTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAA 2908194 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 ||| ||| || || || |||||||| |||||||||||||| | | ||||| ||||||| Sbjct 2907303 TAAGTAACCTGTCAGCAACAAATTCGATATATTGACACATAAGTTTACAATTCATTCCTA 2907362 Query 16086 TAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 | | | || || | || | |||||||||| |||||| || || || ||||||| Sbjct 2907363 TCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGTTCAATTTTGACAGCATCTTTAA 2907422 Query 16146 TGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 | || ||| ||||| ||| ||| | || | | |||||| ||||||| ||| | Sbjct 2907423 TAATTGATGTGACTCGTTCGGAAGATGGTTTTTGTATAATGTGTTTGAACATTAAACATG 2907482 Query 16206 CGAAGTCGCAATGTAGTCC 16224 |||| || ||||||||||| Sbjct 2907483 CGAAATCACAATGTAGTCC 2907501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511396078579120