Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq190 98.7 9e-16 seq2840 96.9 3e-15 seq26 96.9 3e-15 seq65 95.1 1e-14 >seq190 Length=691288 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||||||| | || || ||||| ||||| || || | || Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| || |||||||| | ||| |||||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255186 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| ||||||||| | |||||| | |||| | | ||||| ||| Sbjct 255187 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255246 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| || || |||| || ||| | || || || Sbjct 255247 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255293 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||||||| | || || ||||| ||||| || || | || Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| || |||||||| | ||| |||||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255414 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| ||||||||| | |||||| | |||| | | ||||| ||| Sbjct 255415 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255474 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| || || |||| || ||| | || || || Sbjct 255475 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255521 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||||||| | || || ||||| ||||| || ||| || || Sbjct 260298 ATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTCA 260357 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| ||||||||||| | || || ||| Sbjct 260358 GATACAATAGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACCAA 260417 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| ||||| ||| | |||||| | |||| | | ||||||||| Sbjct 260418 CAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACAAT 260477 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| || || |||| || ||| | |||||||| Sbjct 260478 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGG 260524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||||||| | || || |||||||||||| ||| ||| | | Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| || || ||||| | || || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || || ||| | |||||| | |||| || ||||| || Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||||||||| || | ||||| || | || ||||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGG 260752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||||||| | || || ||||| ||||| ||| || | || Sbjct 260070 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTCGAGGTAGAGGCTTCA 260129 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| || |||||||| | || || || Sbjct 260130 GACACAATAGAGAATGTTAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCTGACCAG 260189 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || |||||| | || ||| | |||| | | || ||||| Sbjct 260190 CAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGGAGAACTCTTTCGGACTACAAC 260249 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||||||| || ||||||| || | |||||||| Sbjct 260250 ATTCAGAAGGAGTCTACTCTCCATTTGGTGTTGAGACTTCGAGGAGG 260296 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 29091 ATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAG 29150 || ||||| || |||||| | |||||| | |||| | | ||||||||||||||||| Sbjct 254968 ATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAATATTCAGAAA 255027 Query 29151 GAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||| |||| || ||| | || || || Sbjct 255028 GAATCTACTCTTCACTTGGTATTGCGACTTCGTGGCGG 255065 >seq2840 Length=3276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| |||||| | |||||||| || |||||| |||||||| | |||| || | ||| Sbjct 3200 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 3141 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||||||||| | || ||||| | || ||| |||| || Sbjct 3140 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 3088 >seq26 Length=4553502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| |||||| | |||||||| || |||||| |||||||| | |||| || | ||| Sbjct 253134 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 253193 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||||||||| | || ||||| | || ||| |||| || Sbjct 253194 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 253246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| |||||| | |||||||| || |||||| |||||||| | |||| || | ||| Sbjct 264940 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 264881 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||||||||| | || ||||| | || ||| |||| || Sbjct 264880 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 264828 >seq65 Length=2871674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || ||||| ||||| |||| || || || Sbjct 612242 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAAACAATTACACTCGAAGTTGAGGCCTCA 612183 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | |||| |||||| ||||||||||| | || |||||| Sbjct 612182 GATACGATTGAAAACGTTAAAGCAAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAG 612123 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTACA 29139 |||||| | ||||| || ||||| ||| ||||||| | | ||| | | || |||| Sbjct 612122 CAAAGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGTACACTTT--CAGACTACA 612065 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||||||| || ||||| Sbjct 612064 ATATTCAGAAGGAATCAACCCTTCA 612040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| |||||||||||| | || |||||| Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611211 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||| | || ||||| || |||||||| |||||| | | ||| | | ||||| | Sbjct 611210 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTT--CGGATTATA 611153 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || |||||||| || ||||| | || | || || ||||||| Sbjct 611152 ACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| |||||||||||| | || |||||| Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611439 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||| | || ||||| || |||||||| |||||| | | ||| | | ||||| | Sbjct 611438 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTT--CGGATTATA 611381 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || |||||||| || ||||| | || | || || ||||||| Sbjct 611380 ACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| |||||||||||| | || |||||| Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611667 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTACA 29139 || ||| | ||||| || ||||||||| ||||||| | | ||| | ||||||| | Sbjct 611666 CAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTT--CCGATTATA 611609 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || |||||||| ||||| || | || | || || ||||||| Sbjct 611608 ACATCCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428321038491230