Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq190 104 2e-17 seq2840 96.9 3e-15 seq26 96.9 3e-15 seq65 93.3 3e-14 seq139 84.2 2e-11 >seq190 Length=691288 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||||||| | || || ||||| ||||| || || | || Sbjct 255067 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255126 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||||| || |||||||| | ||| |||||| Sbjct 255127 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255186 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || || ||||| ||||||||||| |||||| | |||| | | ||||| ||| Sbjct 255187 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255246 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||||||||| || || |||| || ||| | || || || Sbjct 255247 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255293 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||||||| | || || ||||| ||||| || || | || Sbjct 255295 ATGCAGATCTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAGGCTTCA 255354 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||||| || |||||||| | ||| |||||| Sbjct 255355 GACACAATAGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGAATTCCCCCTGATCAA 255414 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || || ||||| ||||||||||| |||||| | |||| | | ||||| ||| Sbjct 255415 CAACGTCTGATTTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCGGATTATAAT 255474 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||||||||| || || |||| || ||| | || || || Sbjct 255475 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGTGGCGG 255521 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||||||| | || || ||||| ||||| || ||| || || Sbjct 260298 ATGCAAATTTTTGTCAAAACACTCACAGGAAAAACTATTACTCTTGAGGTAGAAGCCTCA 260357 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| ||||||||||| | || || ||| Sbjct 260358 GATACAATAGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGACCAA 260417 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| ||||| ||||| |||||| | |||| | | ||||||||| Sbjct 260418 CAACGTTTGATTTTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCGGATTACAAT 260477 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||||||||| || || |||| || ||| | |||||||| Sbjct 260478 ATCCAAAAGGAATCTACACTCCATTTGGTATTGCGACTTCGAGGAGG 260524 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||||||| | || || |||||||||||| ||| ||| | | Sbjct 260526 ATGCAAATCTTCGTCAAAACACTCACAGGGAAAACCATTACCTTGGAAGTAGAAGCTTCT 260585 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || ||||| | || || || Sbjct 260586 GATACAATCGAAAATGTTAAGGCGAAAATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 260645 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || ||||| |||||| | |||| || ||||| || Sbjct 260646 CAACGTTTGATCTTTGCTGGGAAGCAATTAGAAGATGGGAGAACTTTGTTGGATTATAAC 260705 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||| || | ||||| || | || ||||| Sbjct 260706 ATTCAAAAGGAATCTACTCTGCATTTAGTGTTGAGACTCCGTGGAGG 260752 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25164 ATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAG 25223 || ||||| || |||||||| |||||| | |||| | | |||||||||||||| || Sbjct 254968 ATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTACAATATTCAGAAA 255027 Query 25224 GAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||| |||| || ||| | || || || Sbjct 255028 GAATCTACTCTTCACTTGGTATTGCGACTTCGTGGCGG 255065 >seq2840 Length=3276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||| | |||||||| || ||||||||||||||| | |||| || | ||| Sbjct 3200 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 3141 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||||||||| | || ||||| | || ||| |||| || Sbjct 3140 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 3088 >seq26 Length=4553502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||| | |||||||| || ||||||||||||||| | |||| || | ||| Sbjct 253134 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 253193 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||||||||| | || ||||| | || ||| |||| || Sbjct 253194 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 253246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||| | |||||||| || ||||||||||||||| | |||| || | ||| Sbjct 264940 GATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACTTTGTCTGAT 264881 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||||||||| | || ||||| | || ||| |||| || Sbjct 264880 TATAATATTCAGAAGGAATCTACATTACATTTGGTGCTTCGTTTAAGAGGCGG 264828 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611786 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611727 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||||||| | || |||||| Sbjct 611726 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611667 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTACA 25212 || ||| | ||||| || ||||||||||||||||| | | ||| | ||||||| | Sbjct 611666 CAGAGATTGATCTTCGCCGGCAAACAATTGGAAGACGGACGCACACTTT--CCGATTATA 611609 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || ||||||||||| ||||| || | || | || || ||||||| Sbjct 611608 ACATCCAAAAGGAATCAACTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| ||||| |||| || || || Sbjct 612242 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAAACAATTACACTCGAAGTTGAGGCCTCA 612183 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || |||||| ||||||||||| | || |||||| Sbjct 612182 GATACGATTGAAAACGTTAAAGCAAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAG 612123 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTACA 25212 |||||| | ||||| || ||||| ||||||||||| | | ||| | | || |||| Sbjct 612122 CAAAGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGTACACTTT--CAGACTACA 612065 Query 25213 ATATTCAAAAGGAATCTACTCTTCA 25237 ||||||| |||||||| || ||||| Sbjct 612064 ATATTCAGAAGGAATCAACCCTTCA 612040 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || || || || || | || |||||| |||||| | |||||||| Sbjct 611935 AAGCAAAAA-TTCAGGACAAGGAGGGAATTCCACCAGATCAGCAAAGATTGATCTTTGCC 611877 Query 25173 GGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 ||||| |||||||||||| | | ||| | ||||||| ||||||||||||||||| | Sbjct 611876 GGCAAGCAATTGGAAGATGGACGCACACTTT--CCGATTATAATATTCAAAAGGAATCAA 611819 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| || | || | || || ||||||| Sbjct 611818 CTCTGCATCTTGTTCTTCGTTTGAGAGGAGG 611788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611330 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611271 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||||||| | || |||||| Sbjct 611270 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611211 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || ||||| || |||||| | |||||| | | ||| | | ||||| | Sbjct 611210 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTT--CGGATTATA 611153 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || ||||||||||| || ||||| | || | || || ||||||| Sbjct 611152 ACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || |||||||||||| ||| || | | Sbjct 611558 ATGCAAATTTTCGTCAAGACCCTCACAGGTAAAACCATTACCCTTGAAGTTGAGGCTTCT 611499 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||||||| | || |||||| Sbjct 611498 GACACAATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAG 611439 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || ||||| || |||||| | |||||| | | ||| | | ||||| | Sbjct 611438 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGACGCACACTTT--CGGATTATA 611381 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || ||||||||||| || ||||| | || | || || ||||||| Sbjct 611380 ACATCCAAAAGGAATCAACCCTTCATCTTGTTCTGCGTTTGAGAGGAGG 611332 >seq139 Length=3030711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| ||||| | || || ||||| || |||||||| ||| ||| ||| | | Sbjct 1044556 AATGCAGATATTTGTGAAGACTTTGACAGGTAAAACCATCACCCTTGAAGTAGAAGCATC 1044615 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| |||||| ||||||||||| | || ||||| Sbjct 1044616 AGACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGATCA 1044675 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| ||||||| ||||| || ||||| ||||||||| || || | ||||| || Sbjct 1044676 ACAACGACTTATATTTGCTGGAAAACAGTTGGAAGATGGACGTACCTTGTCAGATTATAA 1044735 Query 25214 TATTCA-AAAGGAATC 25228 ||| || ||||| ||| Sbjct 1044736 TATCCAGAAAGGTATC 1044751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410782451124524