Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq190 136 3e-27 seq65 96.9 3e-15 >seq190 Length=691288 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||||||||| |||| |||||||| || ||||||||||| || Sbjct 260296 CCTCCTCGAAGTCTCAACACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 260237 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | | |||||| | ||||| |||||| |||| | ||| ||||| || ||||| Sbjct 260236 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 260177 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || |||||| |||||| ||||| | || | ||||| | ||| ||| Sbjct 260176 ATTCCTTCTTTGTCTTGAATTTTCGCCTTAACATTCTCTATTGTGTCTGAAGCCTCTACC 260117 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | ||||| || || || ||||| ||||| ||||||||| Sbjct 260116 TCGAGAGTAATAGTTTTTCCTGTGAGTGTTTTGACAAAGATCTGCATG 260069 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| || | |||| ||| || ||||| |||||||| ||||| | Sbjct 255977 CCTCCTCGAAGTCTCAAAACAAGATGGAGTGTTGATTCTTTCTGAATGTTATAATCTGAC 255918 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | | |||||| | ||||| |||||| |||| | ||| ||||| || ||||| Sbjct 255917 AGAGTTCTCCCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGCTGGTCAGGAGGA 255858 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || || || |||||| |||||| ||| || | ||| | ||||| | ||| || || Sbjct 255857 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCTATTGTGTCAGAAGCT-TCTAC 255799 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 255798 TTCCAAGGTGATGGTCTTACCTGTGAGCGTTTTAACAAAAATCTGCAT 255751 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||||||| || || | ||||| || ||||||||||| ||||| | Sbjct 260752 CCTCCACGGAGTCTCAACACTAAATGCAGAGTAGATTCCTTTTGAATGTTATAATCCAAC 260693 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | | ||| || | || || ||||| |||| | ||| ||||| || ||||| Sbjct 260692 AAAGTTCTCCCATCTTCTAATTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 260633 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||||||| |||||| ||||| | ||||| || || | ||| || || Sbjct 260632 ATTCCTTCCTTGTCTTGAATTTTCGCCTTAACATTTTCGATTGTATCAGAAGCT-TCTAC 260574 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | ||||| || || || ||||| || || || |||||| || Sbjct 260573 TTCCAAGGTAATGGTTTTCCCTGTGAGTGTTTTGACGAAGATTTGCATGCCT 260522 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||| || || || |||| |||||| || ||||||||||||||||| Sbjct 256434 ACCACCTCGGAGTCTTAAAACTAAATGGAGTGTAGATTCCTTTTGAATGTTGTAATCCAA 256375 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || | ||| || ||||| |||| | ||| |||||||| ||||| Sbjct 256374 CAAAGTTCTTCCATCTTCTAACTGCTTCCCAGCAAAGATCAAACGTTGCTGATCAGGAGG 256315 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGA 118689 || || || |||||| |||||| ||| || | ||| | ||||| | ||| || | Sbjct 256314 AATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCTATTGTGTCAGAAGCT-TCTA 256256 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || | || | ||||| || || || || || ||||| || |||||| || Sbjct 256255 CTTCCAAAGTGATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCATGCCT 256203 >seq65 Length=2871674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || || |||||||| || |||||| | |||| |||| ||| || | || || | Sbjct 611818 GTTGATTCCTTTTGAATATTATAATCGG--AAAGTGTGCGTCCATCTTCCAATTGCTTGC 611875 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | || |||| | | |||||||| || || || ||||||||||| ||||||| || Sbjct 611876 CGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTT 611935 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | ||| || | ||| || ||||| | ||| | || || || || ||| Sbjct 611936 TGACATTTTCAATGGTATCAGACGCT-TCAACCTCCAAGGTAATAGTCTTTCCAGTAAGA 611994 Query 118719 GTTTTTACAAAAATCTGCAT 118738 |||||||||||||| ||||| Sbjct 611995 GTTTTTACAAAAATTTGCAT 612014 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || ||||| ||||||||||| |||| | | |||| ||| || || || || |||| Sbjct 612274 GTCGACTCCTTTTGAATGTTATAAT--CAGAAAGTGTACGTCCGTCTTCTAGTTGCTTTC 612331 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || | | ||| || || ||||| || || ||||||||| ||||||| || Sbjct 612332 CAGCAAATATCAATCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTT 612391 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | || || | |||| || ||||| | ||| | |||||| || |||| Sbjct 612392 TCACGTTTTCAATTGTATCTGATGCT-TCAACCTCCAGGGTTATCGTTTTACCTGTCAAT 612450 Query 118719 GTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 612451 GTCTTGACGAAGATCTGCATG 612471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || |||||||||||||| |||| | | |||| |||| || || | ||||| | Sbjct 610678 GTCGATTCTTTTTGAATGTTATAAT--CAGAAAGTGTGCGTCCGTCTTCCAATTGTTTGC 610735 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || | | |||||| || || || || || |||||||| |||||| || Sbjct 610736 CAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGAATTTTGGCTT 610795 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | ||||| | | ||| || || | ||| | ||||| || || |||| Sbjct 610796 TGACATTTTCAATTGTGTCAGAGGCCTCAACTTCAAGGGTAATAGTTTTACCCGTGAGAG 610855 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || ||||| ||||| Sbjct 610856 TCTTAACGAAAATTTGCAT 610874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815246575272