Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq507 111 2e-19 seq144 107 2e-18 seq4 100 3e-16 seq174 96.9 4e-15 seq33 95.1 1e-14 seq65 93.3 5e-14 seq190 84.2 3e-11 >seq507 Length=66916 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 53358 AAAAATCATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 53299 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 53298 TAACCACTATACTACCGAGGA 53278 >seq144 Length=113180 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 40501 AAAAATCATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 40560 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATA 60146 | |||||||||||| |||||| |||| |||| Sbjct 40561 TAACCACTATACTATCGAGGACTTGATTATA 40591 >seq4 Length=952654 Score = 100 bits (110), Expect = 3e-16 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| | |||| || | ||||||||||||| ||||| |||||||||||||||| | Sbjct 649067 AAAAATTATAAACTCCCCGACGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 649126 Query 60114 TACTCACCACTATACTACCGAGGATT 60139 |||| |||||||||||| |||||||| Sbjct 649127 TACTAACCACTATACTATCGAGGATT 649152 >seq174 Length=4765277 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 628248 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 628307 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 628308 ATACTATCGAGGA 628320 >seq33 Length=501593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 345562 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 345621 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 345622 TACTATCGAGGA 345633 >seq65 Length=2871674 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||| ||| | || | ||| || || |||||||||||| || ||||||| Sbjct 612244 CCTCCTCTTAGACGTAGTACAAGATGTAAAGTCGACTCCTTTTGAATGTTATAATCAGAA 612303 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| ||||| ||||| ||||| ||||| | || ||| ||||| | || Sbjct 612304 AGTGTACGTCCGTCTTCTAGTTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGA 612363 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||||| ||| | | | | || || | ||| || Sbjct 612364 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTTTCAATTGTATCTGATGCTTCAAC 612422 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 612423 CTCCAGGGTTATCGTTTTACCTGTCAATGTCTTGACGAAGATCTGCAT 612470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||| | || | ||||| || |||||||||||||| ||||| | Sbjct 611788 CCTCCTCTCAAACGAAGAACAAGATGCAGAGTTGATTCCTTTTGAATATTATAATCGGAA 611847 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||||| || || || || | || ||||| || | || Sbjct 611848 AGTGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 611907 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| |||||| ||||| | | | || || || ||| || Sbjct 611908 ATTCCCTCCTTGTCC-TGAATTTTTGCTTTGACATTTTCAATGGTATCAGACGCTTCAAC 611966 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || || || || || || || |||||||| |||||||| Sbjct 611967 CTCCAAGGTAATAGTCTTTCCAGTAAGAGTTTTTACAAAAATTTGCAT 612014 >seq190 Length=691288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | | ||| || | ||| | ||| || || || || || ||||| | | Sbjct 256205 CCTCCTCGGAGTCTCAATACAAGATGAAGTGTTGATTCTTTCTGTATGTTATAATCTGAC 256146 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || |||| ||| ||||||||||| || | ||||||||||| | || Sbjct 256145 AGAGTTCTTCCATCCTCTAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGAGGA 256086 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | ||| | || | | ||||| | ||| || Sbjct 256085 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACATTCTCTATTGTGTCTGAAGCTTCTAC 256027 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||| || || | || || |||||||||||||| Sbjct 256026 TTCTAACGTGATGGTTTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 255979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571797114634480