Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 >seq25 Length=3544016 Score = 114 bits (126), Expect = 1e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || ||| || | ||| || ||||||||| || ||||| || |||| ||||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 16317 TAATCCAAAATATAGCGGCAAA--TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 | | ||| || ||||| ||||| || | ||||| |||||||||| ||||| ||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAAA--ATATACCTTCCACTGCAGCAAA 2907812 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 |||||| | || ||| | |||| | ||| | | |||||| ||| ||||| | Sbjct 2907813 TGCAACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTG 2907872 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 ||||||| | ||||||| | ||||| ||||||||||||| Sbjct 2907873 AGCTTTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATA 2907916 Score = 107 bits (118), Expect = 2e-18 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||||| ||||| |||| |||| |||||||||||| || | || Sbjct 2908017 TTTCTTTGGCATCTGCGATATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACAT 2908076 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAG 16606 | ||||| || || ||||| ||||| ||||| | ||||| | |||||||||||| || Sbjct 2908077 TTTCCATGGCGATTTGAAAGCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGAC 2908136 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||| | ||| | | || || || || |||||||| ||| ||||| || || Sbjct 2908137 T-AAATCGTTCGACGAGATTCTCATTGACAATTCCATCAGAAGCGGCAAAGAATGC 2908191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462495430507600