Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq25 113 4e-20 >seq25 Length=3544016 Score = 113 bits (124), Expect = 4e-20 Identities = 168/233 (72%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 14431 TTCAATAGC--ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14488 ||||||| | | |||| ||| |||| ||||| | | || || ||||||||||| Sbjct 2907994 TTCAATAACTGACTAAAAAAA----CCTT-TCTTTGGCATCTGCGATATATGTATCAATT 2908048 Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548 | ||| ||||||||| ||||||| |||||||| || || ||||| ||||| || || Sbjct 2908049 AATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAAGCCATAGAAGCAA 2908108 Query 14549 CTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||| |||||| || ||| | ||||| |||| | | ||| ||||| || || Sbjct 2908109 CGTGCTTCTGTTATTTGTACTTCTTGACT-AAATCGTTCGACGAGATTCTCATTGACAAT 2908167 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660 |||||| ||| ||||| ||||| || | || ||||| | || ||||| Sbjct 2908168 TCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTTCTCTT 2908220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || ||||| |||| ||| | ||||| || || |||| || || ||||||||| || Sbjct 2907281 ACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACAC 2907340 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||||||||| ||||| | || ||||| | || ||||||||||||| | Sbjct 2907341 ATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGT 2907400 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || | ||||||| | | | | | |||| || | || | Sbjct 2907401 TCAATTTTGACAGCATC---TTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTTTGT 2907457 Query 14186 AGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||||| || |||||||| || ||||||||||| || |||| Sbjct 2907458 ATAATGTGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||||||| |||||| || || |||||| | ||| ||||| | |||| |||||| Sbjct 2907697 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTTTC 2907756 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 ||||| || || ||||| || ||| || ||||| || || ||||||||||| || Sbjct 2907757 AACCAGAAAATAGCAGCAAAACTGCCGCTGAAAAATATACCTTCCACTGCAGCAAATGCA 2907816 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14407 | || ||||| |||| || ||| | |||||| ||| ||||| | || | Sbjct 2907817 ACTACACGTTCAGGGAACGTGGCACTTTCATGGTTTATCCAATTTAATGCCCACTGAGCT 2907876 Query 14408 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||||| ||| | | | | ||||| |||||||||| Sbjct 2907877 TTTTTTGTAACACATGGTAAATTCTCAATTGCATTAAATA 2907916 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 13852 AAACTAAAAATCAACATCTAAC-GAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13910 ||| ||||| ||| ||| |||| | |||| | ||| || | || || || ||| Sbjct 2907052 AAATTAAAATTCAGCAT-TAACTGTAAAATTGCTCTCGACTCTATTTTGCATTACTCCCC 2907110 Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 ||| |||||||| | || ||||||| || || || ||||||||||||| || |||| Sbjct 2907111 ATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTCCAAAGAGATAT 2907170 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATA 14002 |||||||||||||| |||||| |||||| Sbjct 2907171 GCTCCATAAAATCAAACGGATTTTCAGACATA 2907202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482328319968880