Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq65 109 4e-19 >seq65 Length=2871674 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | |||||| || ||||||||||||||||| || || | Sbjct 610648 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATGTTATAATCAGAA 610707 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||||||||| || | || | ||| || || || ||| Sbjct 610708 AGTGTGCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 610767 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || ||||| | | ||| |||||| || ||| Sbjct 610768 ATTCCTTCCTTGTCCTGAATTT-TGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAAC 610826 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||| || |||| || || | || || || |||||||||||| Sbjct 610827 TTCAAGGGTAATAGTTTTACCCGTGAGAGTCTTAACGAAAATTTGCATT 610875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| |||||||| || || |||| | ||| | |||||||||||| Sbjct 611812 TGCAGAGTTGATTCCTTTTGAATATTATAATCGGAAAGTGTGCGTCCATCTTCCAATTGC 611871 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| | |||||| ||||| || | || ||||| || ||||| | Sbjct 611872 TTGCCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGAATTT-T 611930 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| ||||| | | ||| || ||| | || || | ||| || | || || || Sbjct 611931 TGCTTTGACATTTTCAATGGTATCAGACGCTTCAACCTCCAAGGTAATAGTCTTTCCAGT 611990 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||||||||| Sbjct 611991 AAGAGTTTTTACAAAAATTTGCAT 612014 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | ||||| |||||||| || ||||| |||||||| | Sbjct 612016 CCACCACGAAGACGAAGTACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAGTCTGAA 612075 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||| ||||| || |||| | |||||| ||||| || Sbjct 612076 AGTGTACGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 612135 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| |||| |||| || || | | ||| || || || ||| Sbjct 612136 ATGCCTTCTTTATCTTGGATTT-TTGCTTTAACGTTTTCAATCGTATCTGAGGCCTCAAC 612194 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || || | || || || ||||||||||| Sbjct 612195 TTCGAGTGTAATTGTTTTACCAGTGAGAGTCTTGACGAAAATTTGCAT 612242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || |||||||| ||||| ||||| || |||| | ||| | |||||||||||| Sbjct 611584 TGCAGAGTTGATTCCTTTTGGATGTTATAATCGGAAAGTGTGCGTCCGTCTTCCAATTGT 611643 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| | ||| || ||||| || | ||||| ||||| ||| | Sbjct 611644 TTGCCGGCGAAGATCAATCTCTGCTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 611703 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| |||||| | ||| ||||| ||| ||| |||| || || Sbjct 611704 GCCTTAACATTCTCAATTGTGTCAGAAGCCTCAACTTCAAGGGTAATGGTTTTACCTGTG 611763 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || || ||||||||||| Sbjct 611764 AGGGTCTTGACGAAAATTTGCAT 611786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379330749751170