Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq141 96.9 7e-15 >seq141 Length=486598 Score = 96.9 bits (106), Expect = 7e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 ||| ||||||||||||| || ||||| |||||||| || || ||| | | |||||| Sbjct 106688 CCAAATGATAGAAGGATTATAATGACAGCATGGAACCCAATTGATATACCAAAAATGGCT 106747 Query 35585 CTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 | ||||| ||||| || | | |||||| || || |||||||| |||||||| || Sbjct 106748 TTGCCTCCTTGCCA-TTGTTTCGTTCAATTCTACGTAAGCAATGGAGAGTTGTCGTGTCA 106806 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTC 35703 | ||||| |||||| ||| | || | ||||| || || ||||| || || || || Sbjct 106807 ACTTTATCAAAGAAGCGCAGACATGGGTCTTGGCGTACCGTTTAATATCGCGTCCTATTC 106866 Query 35704 TCTTCTGACT 35713 | | || ||| Sbjct 106867 TTTGCTAACT 106876 Score = 84.2 bits (92), Expect = 4e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 ||||| | || ||||| || | | || |||| || || |||| || | |||| Sbjct 106299 TTCCATTACTAACTACAAAACGAGTGTTTTGGAAGGGTGTGCTGGAGGAGTTGCTATGGT 106358 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACG 35342 | ||||| || ||| ||||||| ||||||||| | ||||| | ||||| ||| | | Sbjct 106359 TTATCAGAGGTTCAACAAACGCCAAGGAATTGGCCGAAAAGAATGTTCACATATGGGATG 106418 Query 35343 CTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATT 35402 | || | ||||| | || ||| | || || || |||| || ||||||| Sbjct 106419 CGAACAGCTCGCGTAACTTCTTGAATTCCTCTGGCTTCACAGACAGAGAGGAAGGAGATT 106478 Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 ||||||| || || || || || ||| | ||||||||||| ||||| Sbjct 106479 TGGGACCTGTCTATGGTTTTCAGTGGAGACATTTTGGTGCAGAATA 106524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989547661857030