Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq64 152 6e-32 seq25 96.9 4e-15 >seq64 Length=2955609 Score = 152 bits (168), Expect = 6e-32 Identities = 202/276 (73%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| || || ||| || | | ||||| || || || || |||| ||| | | ||| Sbjct 1698023 CTGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCT 1697964 Query 62354 CTCGGTTAAAACTC-TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTC 62412 || |||| | ||| ||| || || ||||| || | ||||||||||||||||| |||| Sbjct 1697963 TTCAGTTAGATCTCGTAATAAG-TGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTC 1697905 Query 62413 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62472 | | | |||||||| |||||||| ||||| | || ||||||||||| |||||||| | Sbjct 1697904 TTCTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTG 1697845 Query 62473 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG- 62531 |||| ||||| || ||||||||||| | | |||| |||||||| || ||||| | Sbjct 1697844 CAGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCC--ATGTTTAGC 1697787 Query 62532 -ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATC 62566 ||||| ||||| | | | ||||||||| | ||| Sbjct 1697786 AATTTTTTCTTTCAAAATTGTCCAATTCCATAAATC 1697751 Score = 140 bits (154), Expect = 4e-28 Identities = 222/313 (71%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| ||||||||||| | || | | ||||| | |||||| |||||||| Sbjct 1696663 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAA 1696604 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 ||||| || | |||| || | ||| |||||||| ||||| | || | ||| |||||| Sbjct 1696603 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTA 1696544 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || || ||||| | ||||||||| | ||| || |||| |||| ||||| | || | | Sbjct 1696543 TTGTATACTCTGATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTAT-TGG 1696485 Query 63513 CCT-CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | || | || |||||| | || | | || || || || || || |||| | Sbjct 1696484 TGTACCTTTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTAA 1696426 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | | ||| |||| |||||| || ||||| || ||||| ||||||||||| |||| | | Sbjct 1696425 TAAGTGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTA 1696366 Query 63631 GTAGAAAACAGCT 63643 ||| ||| || || Sbjct 1696365 GTAAAAAGCAACT 1696353 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| ||||| || |||| |||| ||| || || ||||| ||| Sbjct 1697615 CCTTCATAAGTTTCATATGTTCCTTTCTCTGCAGCAAGTTCACAGCTAGCTTCTAAGGCA 1697556 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 |||||||| | |||||||| || | |||| || | |||||||||| || |||||| Sbjct 1697555 CCGTAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 1697496 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 ||||| | | || |||||| || || | || |||| ||||| || Sbjct 1697495 GGATATCGCATTAAAAGAAACGCATCTGCGAGACCCTGAATTCCAATCCC 1697446 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || ||||||| || | | |||| |||||| |||||||| || || Sbjct 1696890 TTCAAATTCATCGCCCCAAATATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 1696831 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| | || | ||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1696830 CCATACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1696772 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||| | ||||||||| || || ||||| Sbjct 1696771 ATAATTCTCTCGCTCTATGTTCTTCCTTACCTGT 1696738 Score = 86.0 bits (94), Expect = 8e-12 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || || |||| | ||| ||| | || ||||| || || ||||| Sbjct 1696286 CTAGACATTTGCTGTCGTCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGAGTAAAA 1696227 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | ||||| || || ||| || || ||||| ||| || Sbjct 1696226 TAACGTTCTGATAAAAAGTTGTATGTTTCTATAACTTTATCAATATCTTCACCATGGATA 1696167 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | ||||| ||| || || ||||||||||||| ||| | ||| || Sbjct 1696166 GCAACTGCAACTCTCATTAGCATATGTTGTGGTCTTTCAACAACTTTCCCATGTATCTTT 1696107 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || ||| || | || ||||||||||| || || || ||| |||| || Sbjct 1696106 AATAAATAACTTTTCTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 1696047 Query 63882 TAAATAATAACCGAATTGAGCTTAT 63906 ||||| || | ||||| | |||| Sbjct 1696046 TAAATTATTGCGGAATTTAATTTAT 1696022 >seq25 Length=3544016 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| ||| || ||||| ||||| ||||||||||||||| ||||| ||||| Sbjct 2907100 CATTACTCCCCATTTCTGATATTCTCCCACCTTTTTTTCGAAAAAATTTGTTTTACCTTC 2907159 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||| || |||| ||||| |||||||||||||| Sbjct 2907160 CAAAGAGATATGCTCCATAAAATCAAACGGATT 2907192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||| | | || |||||| || || || || || || ||||| |||||| ||| Sbjct 2907284 TTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACACATA 2907343 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | || ||||||||||||||| | || ||| || | || | || | ||||||||||||| Sbjct 2907344 AGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGTTCA 2907403 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || || |||| | | ||||| || | || ||| | ||| |||| | Sbjct 2907404 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTTTGTATAATG 2907463 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||||| ||||| |||||||||||||| || || || |||| Sbjct 2907464 TGTTTGAACATTAAACATGCGAAATCACAATGTAGTCCCT 2907503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795036784480