Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq64 196 5e-45 seq25 131 2e-25 >seq64 Length=2955609 Score = 196 bits (216), Expect = 5e-45 Identities = 231/311 (74%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || ||||||||||||| | | |||| || || ||||| | || ||| | || ||| Sbjct 1698022 TGTATAGAACCATTATTTGCTATAATTTCGTTTTTCATGTCCTCATCCCAAAGATCTCTT 1697963 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 |||| |||| |||| ||| || ||||||| || || |||||||| | |||||| Sbjct 1697962 TCAGTTAGATCTCGTAATAAGTGAGGGTTTACAATTTGGAATTCTCCAGACAGAACTCTT 1697903 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 |||| ||| |||||||| ||||||||||| ||||| |||||||| | ||| ||||| | Sbjct 1697902 CTTGCATAAATATTGCTGGTATATGGTTCTATGGATTCATTATTTCCTAAAATTTGTGCA 1697843 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 |||||||| || ||||| ||||| ||||| | |||||| | ||||||| || |||| Sbjct 1697842 GTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCTAATTCCATGTTTAGCAATT 1697783 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCAT 37342 | | ||| | |||||| ||||||||| ||||| | | || ||||||||||| Sbjct 1697782 TTTTCTTTCAAAATTGTCCAATTCCATAAATCAGTTGGAGTAACATT--CCACATATCAT 1697725 Query 37343 ATTGTAGAATA 37353 |||||| |||| Sbjct 1697724 ATTGTAAAATA 1697714 Score = 154 bits (170), Expect = 1e-32 Identities = 217/301 (72%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | || ||| || || ||||| || ||||||||||| | ||| || | | Sbjct 1696652 TTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCCAAATATATAGCAAA 1696593 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||||||||||||||||| ||||| |||| || ||| | | |||||||||| |||| ||| Sbjct 1696592 TGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATACCGAGCTGTGTTATTGTATACTCT 1696533 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || | || |||||||||| || | |||| | ||| ||||| || || Sbjct 1696532 GATCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTTTTGC 1696473 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATT 38332 ||| ||| | || | ||| || ||||| || || ||| || ||| || ||| Sbjct 1696472 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTACTAATAAGTGCACATC 1696414 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||| |||||| | || ||||| || || ||||| | |||| ||||| ||| |||| Sbjct 1696413 TTTTTAATGTATCATAAATTCCTTCAATGCTATCATCACTCATTGTTAGTAAAAAGCAAC 1696354 Query 38393 T 38393 | Sbjct 1696353 T 1696353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 ||| | ||| ||||||||||| | || | ||| || ||| | || ||||||||||| Sbjct 1696254 AAAAAGTGTTGGAGATGCATGAGTAAAATAACGTTCTGATAAAAAGTTGTATGTTTCTAT 1696195 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || | ||| ||||| | || || ||| | | | || |||||||||||||||||||| Sbjct 1696194 AACTTTATCAATATCTTCACCATGGATAGCAACTGCAACTCTCATTAGCATATGTTGTGG 1696135 Query 38544 TCTTTCTATTATTTTATTAT-TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||| | | ||| || | | ||||| || ||| ||| || | ||| || | | Sbjct 1696134 TCTTTCAACAACTTTCCCATGTATCTTTAA-TAAATAACTTTTCTCAAGTGTCTTAAAAC 1696076 Query 38603 CAAAATAACTATATGAATAATCTCTATCGTA 38633 |||| ||| |||| | |||||||||| || Sbjct 1696075 CAAAGTAATTATAACTAAAATCTCTATCATA 1696045 Score = 98.7 bits (108), Expect = 9e-16 Identities = 133/182 (73%), Gaps = 10/182 (5%) Strand=Plus/Minus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGC-GTATGTAGGATTATCTATA 36915 ||| | |||| || ||||||||||| ||||||||| | ||| || || ||| | ||| Sbjct 1698294 CCATTTTCCAGCCATAAAAATGCATTGAAGTCAGTTTTTCTGTA-GTTGGTTTAGCCATA 1698236 Query 36916 TATATTGTCATTGATTGACT----TTGATCTATAAACGCACCTCTGTCGGCTGCCATTTC 36971 | | |||| | ||||| |||||||||||| ||||||| || |||||||||| Sbjct 1698235 TGAA----CATTTAATGACTGTGATTGATCTATAAATGCACCTCGATCTGCTGCCATTTT 1698180 Query 36972 TAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 ||| || |||||| | ||| ||||| || |||||||| | ||||| || || ||| Sbjct 1698179 TAAGATTACTTTTTGTGGTATTTCCCACACTGTTTTATAAAGCGTTTTTAGATCATTTGG 1698120 Query 37032 TA 37033 || Sbjct 1698119 TA 1698118 >seq25 Length=3544016 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||||||||| ||||||||| |||||||||||| || | ||||||||| || |||||||| Sbjct 2908036 ATATGTATCAATTAATAAAGAATACATTTCTGAGTGTACATTTTCCATGGCGATTTGAAA 2908095 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||||| || ||||| |||| ||||| || | ||||| ||| | | ||| Sbjct 2908096 GCCATAGAAGCAACGTGCTTCTGTTATTTGTACTTCTTGACTAAATCGTTCGACGAGATT 2908155 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||| ||||| |||||| || ||||| ||||||| | | |||||| | ||| Sbjct 2908156 CTCATTGACAATTCCATCAGAAGCGGCAAAGAATGCTAAGACGTAAGATATAAAATGTTT 2908215 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATC 12105 || | ||| |||| ||| ||| || Sbjct 2908216 CTCTTTGTTATTTAAACTATTCCAGTC 2908242 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||||||| ||||| || | | ||| || || || || ||||| ||||| ||| || Sbjct 2907281 ACCTTTTCACAGCCTAATTCAATAAGTAACCTGTCAGCAACAAATTCGATATATTGACAC 2907340 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| | || || || | ||| | || ||||| || | | Sbjct 2907341 ATAAGTTTACAATTCATTCCTATCATTTCAACAGGTAAGGCATCCGTTAAAAATTCTTGT 2907400 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || ||||| | || || || || | ||| ||||||| |||| Sbjct 2907401 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGTTCGGAAGATGGTTTTTGTATA 2907460 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTA 11648 | ||||| ||||||||||| || ||||||||||||| Sbjct 2907461 ATGTGTTTGAACATTAAACATGCGAAATCACAATGTA 2907497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| |||||| || || |||||| |||||| | ||| ||||| | |||| ||||| Sbjct 2907695 CTTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCCGGCATAAGACCTCTTTTTT 2907754 Query 11712 ttATCCAAAATATAGCAGCAAA--TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAA 11769 | | ||| || ||||||||||| || | |||| ||||| || ||||| || ||||| Sbjct 2907755 TCAACCAGAAAATAGCAGCAAAACTGCCGCTGAAA--AATATACCTTCCACTGCAGCAAA 2907812 Query 11770 TGCTACTACTCTTTC 11784 ||| ||||| | ||| Sbjct 2907813 TGCAACTACACGTTC 2907827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468508015099040